View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13985_low_33 (Length: 239)
Name: NF13985_low_33
Description: NF13985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13985_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 47250894 - 47251096
Alignment:
| Q |
19 |
ttagtcccatgtgtttttggcaatcatagtatcatactgtaacaagaacacaaaccatgattataattt----attaaaagttttgaaagtgtatgagtc |
114 |
Q |
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| T |
47250894 |
ttagtcccatgtgtttttggcaatcatagtatcatactgtaacaagaacacaaaccatgattataatttatttattaaaagttttgaaagtgtatgagtc |
47250993 |
T |
|
| Q |
115 |
agtcaacaaatacactcccatagtctgaaaaaagtgcctctccctttttattcctctcacgactcttgcctttgaaagtgggatttgtttcttgttggtt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47250994 |
agtcaacaaatacactcccatagtctgaaaaaagtgcctctccctttttattcctctcacgactcttgcctttgaaagtgggatttgtttcttgttggtt |
47251093 |
T |
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| Q |
215 |
cat |
217 |
Q |
| |
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||| |
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| T |
47251094 |
cat |
47251096 |
T |
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