View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13985_low_8 (Length: 490)

Name: NF13985_low_8
Description: NF13985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13985_low_8
NF13985_low_8
[»] chr3 (2 HSPs)
chr3 (1-481)||(27539608-27540088)
chr3 (3-247)||(20304672-20304915)
[»] chr4 (1 HSPs)
chr4 (48-481)||(16599462-16599894)
[»] chr6 (1 HSPs)
chr6 (1-158)||(7654153-7654309)
[»] scaffold0741 (1 HSPs)
scaffold0741 (3-248)||(5549-5793)
[»] chr1 (3 HSPs)
chr1 (324-481)||(15200148-15200305)
chr1 (324-481)||(15219233-15219390)
chr1 (1-116)||(15200395-15200507)
[»] scaffold0065 (1 HSPs)
scaffold0065 (3-247)||(41533-41776)
[»] chr7 (1 HSPs)
chr7 (3-247)||(26176691-26176933)
[»] chr5 (1 HSPs)
chr5 (3-241)||(37635405-37635642)


Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Complemental strand, 27540088 - 27539608
Alignment:
Q  1 acaacagctgccaaggaacaaatagcgcttggaaagaagcaagttcagacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||  ||||||||    
T  27540088 acaacagctgccaaggaacaaatagcgcttggaaagaagcaagttcagacaaagaaagatacatggattccaaggaccgacaacccttcagagaccggct 27539989  T
Q  101 cgtccctagcttttggaacaacaaatgacactactttcagcaccggatttt-gtggaagcggaaagggaaaccaatgatgaaattcaacaagatatacac 199  Q
    | |||||||||||||| ||||||||||||||||||  |||||||| ||||| |||||||| |||||||||||||||| ||||||||||||||||||||||    
T  27539988 cttccctagcttttggcacaacaaatgacactactc-cagcaccgaatttttgtggaagcagaaagggaaaccaatggtgaaattcaacaagatatacac 27539890  T
Q  200 gtttctgatcaagaaacagaagcagcaacgattcctctgcaaattgaattacatgatgcacacgaggagttagctcttgtcagatcagaggcagtgccca 299  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27539889 gtttctgatcaagaaacataagcagcaacgattcctttgcaaattgaattacatgatgcacacgaggagttagctcttgtcagatcagaggcagtgccca 27539790  T
Q  300 ctactttaccgactcctatggggagccataaagaaacagaaacaacaactgtttcattgcaaattgaaacaattcagaaccaaggggaagcaattctgat 399  Q
    || ||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||    
T  27539789 ctgctttaccgactcctatggggatccataaagaaacagaaacaacaacggcttcattgcaaattgaaacaattcagaaccaaggggaagcaattccgat 27539690  T
Q  400 ccaagaggaaacacatgatgcgcatgagagagtagttcctgtcatatcagaggctgtgcccgcagttttaccgactcctatg 481  Q
    |||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  27539689 ccaagaggaaacacatgatgcgcaggagggagtagttcctgtcagatcagaggcagtgcccgcagttttaccgactcctatg 27539608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 3 - 247
Target Start/End: Complemental strand, 20304915 - 20304672
Alignment:
Q  3 aacagctgccaaggaacaaatagcgcttggaaagaagcaagttcagacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggctcg 102  Q
    |||| ||||||| ||| |||||  || ||| || |||||||||||| ||| ||||||||| || |||||||||||| ||||||||||| ||| ||| ||     
T  20304915 aacaactgccaaagaaaaaatatggcatgggaaaaagcaagttcaggcaacgaaagatacttggattccaaggactaacaacccttcagggatcggttct 20304816  T
Q  103 tccctagcttttggaacaacaaatgacactactttcagcaccggattttgtggaagcggaaagggaaaccaatgatgaaattcaacaagatatacacgtt 202  Q
    ||   ||| |||||  ||||| |||||||||  ||||||||||  | || | |||  ||||||||||   ||||||||  |||| |||||||| |   ||    
T  20304815 tcaagagcatttggcgcaacacatgacacta-attcagcaccgattcttatagaaaaggaaagggaagtaaatgatgatcttcagcaagatattcgtttt 20304717  T
Q  203 tctgatcaagaaacagaagcagcaacgattcctctgcaaattgaa 247  Q
     |||| ||||||||||||| |  | | ||||||||||||||||||    
T  20304716 actgagcaagaaacagaagtaatagcaattcctctgcaaattgaa 20304672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 48 - 481
Target Start/End: Complemental strand, 16599894 - 16599462
Alignment:
Q  48 gacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggctcgtccctagcttttggaacaacaaatgacactactttcagcaccgga 147  Q
    |||||||||||||||||| ||||||||||||||||| |||||| ||| |||||| ||||||||||||||  |||||||||||||||||| ||||| ||||    
T  16599894 gacaaagaaagatacatggattccaaggactgacaagccttcagggatcggctcttccctagcttttggcgcaacaaatgacactactt-cagcatcgga 16599796  T
Q  148 ttttgtggaagcggaaagggaaaccaatgatgaaattcaacaagatatacacgtttctgatcaagaaacagaagcagcaacgattcctctgcaaattgaa 247  Q
    ||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  16599795 ttttgtggaagtggaaagggaaacaaatgatgacattcaacaagatatacacgtttctgaccaagaaacagaagcagcaacaattcctctgcaaattgaa 16599696  T
Q  248 ttacatgatgcacacgaggagttagctcttgtcagatcagaggcagtgcccactactttaccgactcctatggggagccataaagaaacagaaacaacaa 347  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16599695 ttacatgatgcgcacgaggagttagctcttatcagatcagaggcagtgcccactgctttaccgactcctatggggagccataaagaaacagaaacaacaa 16599596  T
Q  348 ctgtttcattgcaaattgaaacaattcagaaccaaggggaagcaattctgatccaagaggaaacacatgatgcgcatgagagagtagttcctgtcatatc 447  Q
    |   |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||| ||||| ||||||||| |||    
T  16599595 cgacttcattgcaaattgaaacaattcagaaccaaggggaagcaattccgatccaagaggaaacacatgatgctcaggagggagtaattcctgtcagatc 16599496  T
Q  448 agaggctgtgcccgcagttttaccgactcctatg 481  Q
    ||||||  ||||| ||||||||||||||||||||    
T  16599495 agaggcaatgccctcagttttaccgactcctatg 16599462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 7654153 - 7654309
Alignment:
Q  1 acaacagctgccaaggaacaaatagcgcttggaaagaagcaagttcagacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||| || ||    
T  7654153 acaacagctgccaaggaacaaatagcgcttggaaagaagcaagtttagacaaagaaagatacatggattccaaggactgacaacccttcagggatcgact 7654252  T
Q  101 cgtccctagcttttggaacaacaaatgacactactttcagcaccggattttgtggaag 158  Q
    | ||||| ||||||||  |||||||||||||||| |||||||||||||||||||||||    
T  7654253 cttccctggcttttggcgcaacaaatgacactac-ttcagcaccggattttgtggaag 7654309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0741 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0741
Description:

Target: scaffold0741; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 3 - 248
Target Start/End: Original strand, 5549 - 5793
Alignment:
Q  3 aacagctgccaaggaacaaatagcgcttggaaagaagcaagttcagacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggctcg 102  Q
    |||||||||||| ||| ||||||||| ||| || |||||||||||| ||| ||||||||| || |||| ||||||||||||||||||| ||| ||| ||     
T  5549 aacagctgccaaagaaaaaatagcgcatgggaaaaagcaagttcaggcaacgaaagatacttggattcgaaggactgacaacccttcagggatcggttct 5648  T
Q  103 tccctagcttttggaacaacaaatgacactactttcagcaccggattttgtggaagcggaaagggaaaccaatgatgaaattcaacaagatatacacgtt 202  Q
    ||   ||| |||||  ||||| |||||||||  ||||||||||  |||| | |||  ||||||||||   ||||||||  |||| |||||||| |  |||    
T  5649 tcaagagcatttggtgcaacacatgacacta-attcagcaccgatttttatagaaaaggaaagggaagtaaatgatgatcttcagcaagatattcgtgtt 5747  T
Q  203 tctgatcaagaaacagaagcagcaacgattcctctgcaaattgaat 248  Q
     |||| ||||||||||||| | || | |||||||||||||||||||    
T  5748 actgagcaagaaacagaagtaacagcaattcctctgcaaattgaat 5793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 324 - 481
Target Start/End: Complemental strand, 15200305 - 15200148
Alignment:
Q  324 gccataaagaaacagaaacaacaactgtttcattgcaaattgaaacaattcagaaccaaggggaagcaattctgatccaagaggaaacacatgatgcgca 423  Q
    ||||| |||||| ||||||| |||| | ||||||| |||||||| || |||| ||||||||||||||||||| | ||||||| |||| ||| ||||||||    
T  15200305 gccatcaagaaatagaaacagcaacagcttcattgaaaattgaagcatttcaaaaccaaggggaagcaattccggtccaagatgaaatacaggatgcgca 15200206  T
Q  424 tgagagagtagttcctgtcatatcagaggctgtgcccgcagttttaccgactcctatg 481  Q
     |||  |||||||||||||| ||||||||  ||  | |||||||||||||||||||||    
T  15200205 agaggaagtagttcctgtcagatcagaggtagtagctgcagttttaccgactcctatg 15200148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 324 - 481
Target Start/End: Complemental strand, 15219390 - 15219233
Alignment:
Q  324 gccataaagaaacagaaacaacaactgtttcattgcaaattgaaacaattcagaaccaaggggaagcaattctgatccaagaggaaacacatgatgcgca 423  Q
    ||||| |||||| ||||||| |||  | |||||||||||||||| || |||||||| ||||||||||||||| | ||||||| |||| ||| |||||||     
T  15219390 gccatcaagaaatagaaacagcaatagcttcattgcaaattgaagcatttcagaactaaggggaagcaattccggtccaagatgaaatacaggatgcgcg 15219291  T
Q  424 tgagagagtagttcctgtcatatcagaggctgtgcccgcagttttaccgactcctatg 481  Q
     |||  |||||||||||||| |||| |||| ||||  ||||||||||| |||||||||    
T  15219290 agaggaagtagttcctgtcagatcataggcagtgcttgcagttttaccaactcctatg 15219233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 15200507 - 15200395
Alignment:
Q  1 acaacagctgccaaggaacaaatagcgcttggaaagaagcaagttcagacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggct 100  Q
    |||||||||||||||||||||||||||||||| |||||| |  | || |||| ||||| ||||||  |||||   ||||||||||||||| | |  ||||    
T  15200507 acaacagctgccaaggaacaaatagcgcttgggaagaagtagatacaaacaacgaaagctacatgggttcca---actgacaacccttcaggtataggct 15200411  T
Q  101 cgtccctagcttttgg 116  Q
    | ||||| ||||||||    
T  15200410 cctccctggcttttgg 15200395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 3 - 247
Target Start/End: Original strand, 41533 - 41776
Alignment:
Q  3 aacagctgccaaggaacaaatagcgcttggaaagaagcaagttcagacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggctcg 102  Q
    |||||||||||| ||| |||||| || ||| || |||||||||||| ||| ||||||||| || |||||||||| ||||||||||||| ||| ||| ||     
T  41533 aacagctgccaaagaaaaaatagtgcatgggaaaaagcaagttcaggcaacgaaagatacttggattccaaggattgacaacccttcagggatcggttct 41632  T
Q  103 tccctagcttttggaacaacaaatgacactactttcagcaccggattttgtggaagcggaaagggaaaccaatgatgaaattcaacaagatatacacgtt 202  Q
    ||   ||| |||||  ||||| || ||||||| |||| |||||| | || | |||  ||||||||||   |||||||| ||||| |||||| | |  |||    
T  41633 tcaagagcatttggcgcaacagatcacactac-ttcaacaccggttcttatagaaaaggaaagggaagtaaatgatgatattcagcaagatcttcgtgtt 41731  T
Q  203 tctgatcaagaaacagaagcagcaacgattcctctgcaaattgaa 247  Q
     |||| ||||||||||||||| || ||||||||||||||||||||    
T  41732 actgagcaagaaacagaagcaacagcgattcctctgcaaattgaa 41776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 3 - 247
Target Start/End: Original strand, 26176691 - 26176933
Alignment:
Q  3 aacagctgccaaggaacaaatagcgcttggaaagaagcaagttcagacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggctcg 102  Q
    |||||||||||| |||  |||||||| ||| || |||||||||||| |||  |||||||| || |||| ||||||||| ||||||||| ||| ||| ||     
T  26176691 aacagctgccaaagaaataatagcgcatgggaaaaagcaagttcaggcaacaaaagatacttggattcgaaggactgaaaacccttcagggatcggttct 26176790  T
Q  103 tccctagcttttggaacaacaaatgacactactttcagcaccggattttgtggaagcggaaagggaaaccaatgatgaaattcaacaagatatacacgtt 202  Q
    ||   ||| |||||  ||||| |||||||||| ||||||||||| | || | |||  ||||||||||   |||||| |  ||||||||||||| |  |||    
T  26176791 tcaagagcatttggcgcaacacatgacactac-ttcagcaccgggtcttatagaa-aggaaagggaagtaaatgataatcttcaacaagatattcgtgtt 26176888  T
Q  203 tctgatcaagaaacagaagcagcaacgattcctctgcaaattgaa 247  Q
     |||| ||||||||||||| | || | |||||||| |||||||||    
T  26176889 actgagcaagaaacagaagtaacagcaattcctctacaaattgaa 26176933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 241
Target Start/End: Complemental strand, 37635642 - 37635405
Alignment:
Q  3 aacagctgccaaggaacaaatagcgcttggaaagaagcaagttcagacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggctcg 102  Q
    ||||| |||||| ||| ||||| ||| ||| || |||||||||||| ||| ||||||||| || |||||||||||||||||||||||| ||| ||| ||     
T  37635642 aacagttgccaaagaaaaaataacgcatgggaaaaagcaagttcaggcaacgaaagatacttggattccaaggactgacaacccttcagggatcggttct 37635543  T
Q  103 tccctagcttttggaacaacaaatgacactactttcagcaccggattttgtggaagcggaaagggaaaccaatgatgaaattcaacaagatatacacgtt 202  Q
    ||   ||| |||||  ||||| ||| |||||  |||| |||||  |||| | |||  ||||||||||   |||||||| ||||| |||||||| |  |||    
T  37635542 tcaagagcatttggcgcaacacatggcacta-attcaacaccgatttttatagaaaaggaaagggaagtaaatgatgatattcagcaagatattcgtgtt 37635444  T
Q  203 tctgatcaagaaacagaagcagcaacgattcctctgcaa 241  Q
     |||| ||  ||||||||| | |||| ||||||||||||    
T  37635443 actgagcagcaaacagaagtaacaacaattcctctgcaa 37635405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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