View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13986_high_3 (Length: 382)
Name: NF13986_high_3
Description: NF13986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13986_high_3 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 20)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 6 - 366
Target Start/End: Original strand, 3172999 - 3173359
Alignment:
| Q |
6 |
gcacagacacatacatacacacatctctttggaagaaaaagggattataaatgatattacctttgagtggcagtaaaccattctgaaacagtttaggaat |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| |
|
|
| T |
3172999 |
gcacacacacatacatacacacatctctttggaagaaaaagggattataaatgatattacctttgagtggtagtagaccattctgaaacaatttaggaat |
3173098 |
T |
|
| Q |
106 |
atgaaaaccagccaagaagaaacaagcactacatggcgaaaatagaacaattgggagtgaatgttcttcagcaacatctactgtaaatggcatatagcaa |
205 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3173099 |
atgaaaaccagccaagaagaaacatgcactacacggcgaaaatagaacaattgggagagcatgttcttcagcaacatctactgtaaatggcatatagcaa |
3173198 |
T |
|
| Q |
206 |
tcggaaacaaagcaagtaactggaggtataagaccagaagttgcagaatcatgaagtttagcaaaaagttcacgaaaaaagcgatgaaagttcttgatga |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3173199 |
tcggaaacaaagcaagtaactggaggtataagaccagcagttgcagaatcgtgaagtttagcaaaaagttcacgaaaaaagcgatgaaagttcttgatga |
3173298 |
T |
|
| Q |
306 |
ttgatcgacaaagagcgcgtaagtcttgactaacatcaccatcaccttccattgaagttaa |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3173299 |
ttgatcgacaaagagcgcgtaagtcttgactaacatcaccatcaccttccattgaagttaa |
3173359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 61 - 351
Target Start/End: Complemental strand, 4489274 - 4488984
Alignment:
| Q |
61 |
attacctttgagtggcagtaaaccattctgaaacagtttaggaatatgaaaaccagccaagaagaaacaagcactacatggcgaaaatagaacaattggg |
160 |
Q |
| |
|
||||||||||||||| || | |||||||||||||| ||||| ||| |||||| || ||||| || | ||||||||||| ||||| |||||||||||| |
|
|
| T |
4489274 |
attacctttgagtggtagcacaccattctgaaacaatttagtaatgtgaaaagtagagtagaagtaagatgcactacatggggaaaagagaacaattggg |
4489175 |
T |
|
| Q |
161 |
agtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagtaactggaggtataagaccagaagttgcagaatcatgaa |
260 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||| ||||| |||||| ||||| ||||||||||||||||| |||||||||| ||| ||||| |||| || |
|
|
| T |
4489174 |
agtgcatgttcttcagcagcatctactgtaaatgccatattgcaatcagaaactaagcaagtaactggagggataagaccagcagtagcagagtcattaa |
4489075 |
T |
|
| Q |
261 |
gtttagcaaaaagttcacgaaaaaagcgatgaaagttcttgatgattgatcgacaaagagcgcgtaagtcttgactaacatcaccatcacc |
351 |
Q |
| |
|
||||||||| || | ||| ||| || | ||||| || || ||||||||| |||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
4489074 |
gtttagcaagaaatacaccaaagaattggtgaaaattgttcatgattgatagacaaagagcgcgtaaatcttgactaacatcgccatcacc |
4488984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 61 - 356
Target Start/End: Complemental strand, 4503370 - 4503075
Alignment:
| Q |
61 |
attacctttgagtggcagtaaaccattctgaaacagtttaggaatatgaaaaccagccaagaagaaacaagcactacatggcgaaaatagaacaattggg |
160 |
Q |
| |
|
||||||||||||||| || | || ||| ||||||| ||||| ||| |||||| || ||||| || | ||||||||||| |||| |||||||||||| |
|
|
| T |
4503370 |
attacctttgagtggtagcatactattgtgaaacaatttagcaatgtgaaaagtagagtagaagtaagatgcactacatggggaaacgagaacaattggg |
4503271 |
T |
|
| Q |
161 |
agtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagtaactggaggtataagaccagaagttgcagaatcatgaa |
260 |
Q |
| |
|
|||| ||||||||||||| ||| ||||| ||||||||| | |||||| ||||| ||||||||||||||||| |||||||||| ||| ||||| |||| || |
|
|
| T |
4503270 |
agtgtatgttcttcagcagcatatactggaaatggcatgttgcaatcagaaactaagcaagtaactggagggataagaccagcagtggcagagtcattaa |
4503171 |
T |
|
| Q |
261 |
gtttagcaaaaagttcacgaaaaaagcgatgaaagttcttgatgattgatcgacaaagagcgcgtaagtcttgactaacatcaccatcaccttcca |
356 |
Q |
| |
|
||||| ||| || ||||| ||| || | ||||| ||||| |||||||| || | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4503170 |
gtttaacaagaaattcaccaaagaattggtgaaaattcttcttgattgatagatagagagcgcgtaagtcttgactaacatcaccatcaccttcca |
4503075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 61 - 366
Target Start/End: Original strand, 4561713 - 4562018
Alignment:
| Q |
61 |
attacctttgagtggcagtaaaccattctgaaacagtttaggaatatgaaaaccagccaagaagaaacaagcactacatggcgaaaatagaacaattggg |
160 |
Q |
| |
|
||||||||||| ||| ||| || ||||||| ||| ||||||| | | |||| ||||||||| |||| || |||| ||| ||||| ||||||| |||| |
|
|
| T |
4561713 |
attacctttgaatggtagttgactattctgatacattttaggactgagcaaacaagccaagaaataacatgctctacttggggaaaaaagaacaactggg |
4561812 |
T |
|
| Q |
161 |
agtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagtaactggaggtataagaccagaagttgcagaatcatgaa |
260 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||||||| |||||||| ||||| |||||||| ||||| || |||||||||| ||| ||||| || |||| |
|
|
| T |
4561813 |
agtgcatgttcttcagcagcagctactgtaaatggcatgtagcaatcagaaactaagcaagtgactggggggataagaccagcagtggcagagtcttgaa |
4561912 |
T |
|
| Q |
261 |
gtttagcaaaaagttcacgaaaaaagcgatgaaagttcttgatgattgatcgacaaagagcgcgtaagtcttgactaacatcaccatcaccttccattga |
360 |
Q |
| |
|
||||||||| ||||||| ||| ||| | ||||||||| | ||||||||| || ||||| | ||| ||||||||||| |||||||||||| ||| ||| |
|
|
| T |
4561913 |
gtttagcaagaagttcatcaaagaagtggtgaaagttcgttatgattgattcaccaagagagtgtaggtcttgactaatatcaccatcaccatcctttgg |
4562012 |
T |
|
| Q |
361 |
agttaa |
366 |
Q |
| |
|
|||||| |
|
|
| T |
4562013 |
agttaa |
4562018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 366
Target Start/End: Original strand, 4575461 - 4575811
Alignment:
| Q |
14 |
acatacatacacacatctctttggaagaaaaagggattataaatgatattacctttgagtggcagtaaaccattctgaaacagtttaggaatatgaaaac |
113 |
Q |
| |
|
||||||| ||||| ||||||| ||||||||||||| | ||||||| ||||||||| ||| | | || |||| || ||| ||||||| | | |||| |
|
|
| T |
4575461 |
acatacacacacagatctcttaagaagaaaaagggaacaaaaatgat--tacctttgaatggtacttgactattcagatacattttaggactgagcaaac |
4575558 |
T |
|
| Q |
114 |
cagccaagaagaaacaagcactacatggcgaaaatagaacaattgggagtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaac |
213 |
Q |
| |
|
|| |||||| |||| ||||||||||| ||||| |||||||||||||| | ||||||||||||| ||||||||||||||||||| |||||||| ||||| |
|
|
| T |
4575559 |
aagacaagaaataacatgcactacatggggaaaaaagaacaattgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaac |
4575658 |
T |
|
| Q |
214 |
aaagcaagtaactggaggtataagaccagaagttgcagaatcatgaagtttagcaaaaagttcacgaaaaaagcgatgaaagttcttgatgattgatcga |
313 |
Q |
| |
|
|||||||| ||||| || |||||||||| ||| ||||| || ||||||||||||| ||||||| ||| ||| | |||||||| | ||||||||| | |
|
|
| T |
4575659 |
taagcaagtgactggggggataagaccagcagtggcagagtcttgaagtttagcaagaagttcatcaaagaagtggcgaaagttcgttatgattgattca |
4575758 |
T |
|
| Q |
314 |
caaagagcgcgtaagtcttgactaacatcaccatcaccttccattgaagttaa |
366 |
Q |
| |
|
| ||||| | ||| ||||||||| |||||||||| ||| ||| ||| |||||| |
|
|
| T |
4575759 |
ccaagagagtgtaggtcttgacttacatcaccattaccatcctttggagttaa |
4575811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 24 - 366
Target Start/End: Original strand, 4481880 - 4482221
Alignment:
| Q |
24 |
acacatctctttggaagaaaaagggattataaatgatattacctttgagtggcagtaaaccattctgaaacagtttaggaatatgaaaaccagccaagaa |
123 |
Q |
| |
|
||||||||||| | ||||||||| || ||||||||||| |||||||||||| || | |||||||||||||| ||||||||| | || || | || |
|
|
| T |
4481880 |
acacatctcttagaaagaaaaagagaacataaatgatat-acctttgagtggtagcacaccattctgaaacaatttaggaatcaaagaagtagagagtaa |
4481978 |
T |
|
| Q |
124 |
gaaacaagcactacatggcgaaaatagaacaattgggagtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagta |
223 |
Q |
| |
|
| |||| ||||| || ||||| |||||||||||||||| ||||||||| ||| ||||||||||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
4481979 |
gtaacatgcactgaccggggaaaagagaacaattgggagtgcatgttcttcggcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtg |
4482078 |
T |
|
| Q |
224 |
actggaggtataagaccagaagttgcagaatcatgaagtttagcaaaaagttcacgaaaaaagcgatgaaagttcttgatgattgatcgacaaagagcgc |
323 |
Q |
| |
|
||||| || |||| ||||| ||| ||||| |||||||||||||| | || |||| ||| ||| | |||||||| | ||||||||| || ||||| | |
|
|
| T |
4482079 |
actggggggataataccagcagtggcagattcatgaagtttagccagaaattcatcaaagaagtggcgaaagttcgtcatgattgattgagtaagagaga |
4482178 |
T |
|
| Q |
324 |
gtaagtcttgactaacatcaccatcaccttccattgaagttaa |
366 |
Q |
| |
|
|||||||||||| || ||| |||||||||| |||| |||||| |
|
|
| T |
4482179 |
ataagtcttgacttacttcatcatcaccttcaattggagttaa |
4482221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 62 - 359
Target Start/End: Original strand, 4623359 - 4623656
Alignment:
| Q |
62 |
ttacctttgagtggcagtaaaccattctgaaacagtttaggaatatgaaaaccagccaagaagaaacaagcactacatggcgaaaatagaacaattggga |
161 |
Q |
| |
|
|||||||||||||| | || ||| |||| ||||||| || ||| || ||| ||| ||||||| || |||||| ||| || || | ||||||||||| |
|
|
| T |
4623359 |
ttacctttgagtggtattagacctttctcaaacagtgtatgaaagtgtaaaacagacaagaaggtacttgcactagctggggagaagaaaacaattggga |
4623458 |
T |
|
| Q |
162 |
gtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagtaactggaggtataagaccagaagttgcagaatcatgaag |
261 |
Q |
| |
|
||| ||| ||||||||| | | || |||||||| ||| || ||||||||||| |||||||||||||| || | |||||||| ||| ||||| |||||||| |
|
|
| T |
4623459 |
gtgcatgctcttcagcagcttgtattgtaaatgacatgtaacaatcggaaactaagcaagtaactggtggaacaagaccagcagtggcagagtcatgaag |
4623558 |
T |
|
| Q |
262 |
tttagcaaaaagttcacgaaaaaagcgatga---aagttcttgatgattgatcgacaaagagcgcgtaagtcttgactaacatcaccatcaccttccatt |
358 |
Q |
| |
|
||| |||| |||||||| ||||| ||||| || ||||| | ||||| | |||||| | ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4623559 |
ttttgcaagaagttcac---aaaagggatgatagaaattcttccttattgaatcagaaagagagggtatgtcttgactaacatcaccatcaccttccatt |
4623655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 143 - 278
Target Start/End: Original strand, 4471050 - 4471185
Alignment:
| Q |
143 |
gaaaatagaacaattgggagtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagtaactggaggtataagaccag |
242 |
Q |
| |
|
||||| ||||| |||||||||| | ||||||||||| ||||||||||||||||||| || ||||| |||| | ||||||||||||||| |||||||||| |
|
|
| T |
4471050 |
gaaaagagaacgattgggagtgcacgttcttcagcagcatctactgtaaatggcatgtaacaatcagaaattatgcaagtaactggagggataagaccag |
4471149 |
T |
|
| Q |
243 |
aagttgcagaatcatgaagtttagcaaaaagttcac |
278 |
Q |
| |
|
||| ||||| ||| |||| ||| || |||||||| |
|
|
| T |
4471150 |
cagtggcagaggcatcaagtctagtaagaagttcac |
4471185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 355
Target Start/End: Complemental strand, 4298519 - 4298281
Alignment:
| Q |
117 |
ccaagaagaaacaagcactacatggcgaaaatagaacaattgggagtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaa |
216 |
Q |
| |
|
|||||||| |||| |||||| ||| |||| |||| ||||||||||| ||||||||| ||| | | || ||||||| ||| | |||| | ||| || |
|
|
| T |
4298519 |
ccaagaaggaacatgcactagctggacaaaagagaataattgggagtgcatgttcttccgcagcttgtatggtaaatgacattaaaaaatcagcaactaa |
4298420 |
T |
|
| Q |
217 |
gcaagtaactggaggtataagaccagaagttgcagaatcatgaagtttagcaaaaagttcacgaaaaaagcgatgaaagttcttgatgattgatcgacaa |
316 |
Q |
| |
|
|||||||||||| |||| |||||||| ||| ||||||||| |||||||||||| |||||||| ||| || | |||||||| |||||||| | || |
|
|
| T |
4298419 |
gcaagtaactggtggtacaagaccagcagtggcagaatcacgaagtttagcaagaagttcaccaaagggctgaaggaagttctttctgattgattgggaa |
4298320 |
T |
|
| Q |
317 |
agagcgcgtaagtcttgactaacatcaccatcaccttcc |
355 |
Q |
| |
|
|||| ||| ||||||| ||||||| |||||||||||| |
|
|
| T |
4298319 |
agagatggtatgtcttgagtaacatctccatcaccttcc |
4298281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 29 - 238
Target Start/End: Original strand, 4462230 - 4462438
Alignment:
| Q |
29 |
tctctttggaagaaaaagggattataaatgatattacctttgagtggcagtaaaccattctgaaacagtttaggaatatgaaaaccagccaagaagaaac |
128 |
Q |
| |
|
|||||| |||||||||||||| | | ||||||| ||||||||||||||| | |||||||||||||| ||||||||| ||| || || | || ||| |
|
|
| T |
4462230 |
tctcttaggaagaaaaagggaacaaagatgatat-acctttgagtggcagcacaccattctgaaacaatttaggaatgtgagaagtagtgagtgagcaac |
4462328 |
T |
|
| Q |
129 |
aagcactacatggcgaaaatagaacaattgggagtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagtaactgg |
228 |
Q |
| |
|
| ||||| || ||||| ||||| |||||||||| | ||| |||||| |||| |||||||||||||| || ||||| ||||| | ||||||||| || |
|
|
| T |
4462329 |
atgcactgaccggggaaaagagaacgattgggagtgcacgttgttcagcggcatccactgtaaatggcatgtaacaatcagaaactatgcaagtaaccgg |
4462428 |
T |
|
| Q |
229 |
aggtataaga |
238 |
Q |
| |
|
||| |||||| |
|
|
| T |
4462429 |
agggataaga |
4462438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 143 - 278
Target Start/End: Original strand, 4627283 - 4627418
Alignment:
| Q |
143 |
gaaaatagaacaattgggagtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagtaactggaggtataagaccag |
242 |
Q |
| |
|
||||| ||| |||||||||||| ||||||||||||| | | || ||||||| ||| | ||||| ||||| |||||||||||||| | | |||||||| |
|
|
| T |
4627283 |
gaaaagagagcaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaacaatctgaaactaagcaagtaactggtgcaacaagaccag |
4627382 |
T |
|
| Q |
243 |
aagttgcagaatcatgaagtttagcaaaaagttcac |
278 |
Q |
| |
|
||| || || |||||||||||||||| |||||||| |
|
|
| T |
4627383 |
cagtggctgagtcatgaagtttagcaagaagttcac |
4627418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 366
Target Start/End: Original strand, 4586840 - 4586988
Alignment:
| Q |
218 |
caagtaactggaggtataagaccagaagttgcagaatcatgaagtttagcaaaaagttcacgaaaaaagcgatgaaagttcttgatgattgatcgacaaa |
317 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||| |||| |||| |||||| |||||| || ||| | | |||||||| |||||||| ||||| |
|
|
| T |
4586840 |
caagtgactggagggataagaccagatgttgcagagtcattaagtctagcaagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaa |
4586939 |
T |
|
| Q |
318 |
gagcgcgtaagtcttgactaacatcaccatcaccttccattgaagttaa |
366 |
Q |
| |
|
||||| | |||||||||||||||||||||||| ||| ||| |||||| |
|
|
| T |
4586940 |
gagcgtaaatgtcttgactaacatcaccatcaccatccgttggagttaa |
4586988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 4266040 - 4265954
Alignment:
| Q |
155 |
attgggagtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagtaactggaggtataagacca |
241 |
Q |
| |
|
|||||||||| ||||||||| ||| |||||| |||||| ||||| || ||||||||||| |||||||||| ||| || |||| |||| |
|
|
| T |
4266040 |
attgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaacca |
4265954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 155 - 283
Target Start/End: Complemental strand, 4513965 - 4513837
Alignment:
| Q |
155 |
attgggagtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagtaactggaggtataagaccagaagttgcagaat |
254 |
Q |
| |
|
|||||||||| | ||||||||||||| | | |||||||||||| ||||| ||||| ||||||||||| |||||||||||| | ||||||| | |
|
|
| T |
4513965 |
attgggagtgcaagttcttcagcaacttgtgtagtaaatggcataatacaatcagaaactaagcaagtaacaaaaggtataagaccggcttttgcagagt |
4513866 |
T |
|
| Q |
255 |
catgaagtttagcaaaaagttcacgaaaa |
283 |
Q |
| |
|
||| ||||||||| |||||||| |||||| |
|
|
| T |
4513865 |
cattaagtttagctaaaagttcgcgaaaa |
4513837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 283
Target Start/End: Original strand, 4581221 - 4581287
Alignment:
| Q |
217 |
gcaagtaactggaggtataagaccagaagttgcagaatcatgaagtttagcaaaaagttcacgaaaa |
283 |
Q |
| |
|
||||||||||||||| | |||||||||||| ||||| |||| |||| |||||| |||||||| |||| |
|
|
| T |
4581221 |
gcaagtaactggagggacaagaccagaagtggcagagtcattaagtctagcaagaagttcacaaaaa |
4581287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 151 - 278
Target Start/End: Complemental strand, 4259163 - 4259036
Alignment:
| Q |
151 |
aacaattgggagtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagtaactggaggtataagaccagaagttgca |
250 |
Q |
| |
|
|||||||||||||| ||| ||||||||| | | || |||||| ||| || ||||| ||||| ||||||||||| || || | || ||||| ||| || |
|
|
| T |
4259163 |
aacaattgggagtgcatgctcttcagcagcttgtatactaaatgacatgtaacaatcagaaactaagcaagtaacaggtggaacaataccagtagtggct |
4259064 |
T |
|
| Q |
251 |
gaatcatgaagtttagcaaaaagttcac |
278 |
Q |
| |
|
|| || ||||||||||||| |||||||| |
|
|
| T |
4259063 |
gagtcttgaagtttagcaagaagttcac |
4259036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 359
Target Start/End: Original strand, 4594328 - 4594359
Alignment:
| Q |
328 |
gtcttgactaacatcaccatcaccttccattg |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
4594328 |
gtcttgactaacatcaccatcaccttccattg |
4594359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 4470970 - 4471012
Alignment:
| Q |
63 |
tacctttgagtggcagtaaaccattctgaaacagtttaggaat |
105 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||||||| |
|
|
| T |
4470970 |
tacctttgagtggcagcacaccattctgaaacaatttaggaat |
4471012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 359
Target Start/End: Original strand, 4618620 - 4618650
Alignment:
| Q |
329 |
tcttgactaacatcaccatcaccttccattg |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4618620 |
tcttgactaacatcaccatcaccttccattg |
4618650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 4255628 - 4255551
Alignment:
| Q |
149 |
agaacaattgggagtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagtaact |
226 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| | | || ||||||| ||| || ||||| ||||| |||||||||||| |
|
|
| T |
4255628 |
agaacaattgggagtgcatgctcttcagcagcttgtatggtaaatgacatgtaacaatcagaaactaagcaagtaact |
4255551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 118 - 349
Target Start/End: Complemental strand, 2474 - 2243
Alignment:
| Q |
118 |
caagaagaaacaagcactacatggcgaaaatagaacaattgggagtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaag |
217 |
Q |
| |
|
||||||| | || ||||||| ||||||| | |||| |||||||||| || |||||||||| | | || ||||||| ||| || ||||| ||||| ||| |
|
|
| T |
2474 |
caagaaggagcatgcactacctggcgaataaagaaggattgggagtgcatattcttcagcagcttgtatggtaaatgacatgtaacaatcagaaactaag |
2375 |
T |
|
| Q |
218 |
caagtaactggaggtataagaccagaagttgcagaatcatgaagtttagcaaaaagttcacgaaaaaagcgatgaaagttcttgatgattgatcgacaaa |
317 |
Q |
| |
|
| ||| |||||||| |||||||||||| | ||||| || | |||| |||||| |||||| ||||| ||| || | ||||| || |||||||| ||||| |
|
|
| T |
2374 |
ctagttactggagggataagaccagaattggcagactcgtcaagtctagcaagaagttcgcgaaagaagtgaaggaagttttttctgattgatttacaaa |
2275 |
T |
|
| Q |
318 |
gagcgcgtaagtcttgactaacatcaccatca |
349 |
Q |
| |
|
||| | ||| |||||||||||||| ||||||| |
|
|
| T |
2274 |
gagagagtatgtcttgactaacattaccatca |
2243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 149 - 283
Target Start/End: Complemental strand, 20862793 - 20862659
Alignment:
| Q |
149 |
agaacaattgggagtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagtaactggaggtataagaccagaagttg |
248 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| | || |||| || ||| | | ||| ||||| ||||||||||| ||||||||||||||||| | | |
|
|
| T |
20862793 |
agaacaattgggagtgcaagttcttcagcaacttgtatggtaactgacatgaaactatcagaaactaagcaagtaacaggaggtataagaccagatttgg |
20862694 |
T |
|
| Q |
249 |
cagaatcatgaagtttagcaaaaagttcacgaaaa |
283 |
Q |
| |
|
||| ||||||||||| |||| ||||||||||||| |
|
|
| T |
20862693 |
aagagtcatgaagtttggcaagaagttcacgaaaa |
20862659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 351
Target Start/End: Complemental strand, 16685132 - 16685074
Alignment:
| Q |
293 |
aagttcttgatgattgatcgacaaagagcgcgtaagtcttgactaacatcaccatcacc |
351 |
Q |
| |
|
|||||||| |||||||| |||||||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
16685132 |
aagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcacc |
16685074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 190 - 349
Target Start/End: Original strand, 2001 - 2160
Alignment:
| Q |
190 |
aaatggcatatagcaatcggaaacaaagcaagtaactggaggtataagaccagaagttgcagaatcatgaagtttagcaaaaagttcacgaaaaaagcga |
289 |
Q |
| |
|
||||| ||| || ||||| ||||| |||| ||| |||||||| |||||||||||| | ||||| || | |||| |||||| |||||| ||||| ||| || |
|
|
| T |
2001 |
aaatgacatgtaacaatcagaaactaagctagttactggagggataagaccagaattggcagactcgtcaagtctagcaagaagttcgcgaaagaagtga |
2100 |
T |
|
| Q |
290 |
tgaaagttcttgatgattgatcgacaaagagcgcgtaagtcttgactaacatcaccatca |
349 |
Q |
| |
|
| ||||| || |||||||| |||||||| | ||| |||||||||||||| ||||||| |
|
|
| T |
2101 |
aggaagttttttctgattgatttacaaagagagagtatgtcttgactaacattaccatca |
2160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 3517 - 3383
Alignment:
| Q |
143 |
gaaaatagaacaattgggagtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagtaactggaggtataagaccag |
242 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||| | | || ||||||||||| || ||||| | || | |||||||||| | || | |||||||| |
|
|
| T |
3517 |
gaaaagagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatggcatgtaacaatcagcgactatgcaagtaacttgtggaacaagaccag |
3418 |
T |
|
| Q |
243 |
aagttgcagaatcatgaagtttagcaaaaagttca |
277 |
Q |
| |
|
||| ||||| |||||||||||| ||| ||||||| |
|
|
| T |
3417 |
cagtggcagagtcatgaagtttaacaagaagttca |
3383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 365
Target Start/End: Original strand, 3088061 - 3088100
Alignment:
| Q |
326 |
aagtcttgactaacatcaccatcaccttccattgaagtta |
365 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
3088061 |
aagtcttgactaacatcaccattaccttccattggagtta |
3088100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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