View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13986_high_4 (Length: 307)
Name: NF13986_high_4
Description: NF13986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13986_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 179 - 295
Target Start/End: Original strand, 36836542 - 36836658
Alignment:
| Q |
179 |
atttgagtgtaaaaattatatatgaagtcaaaagctataattttagcttgaaatttaaatcattccgaaggtaacatcaattataaccaaacatacaatt |
278 |
Q |
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| T |
36836542 |
atttgagtgtaaaaattatatatgaagtcaaaagctataattttagcttgaaatttaaatcattccgaaggtaacatcaattataaccaaacatacaatt |
36836641 |
T |
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| Q |
279 |
agacacaccacaatatt |
295 |
Q |
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| T |
36836642 |
agacacaccacaatatt |
36836658 |
T |
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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 36836464 - 36836497
Alignment:
| Q |
18 |
tcatgaacaaatttagttgattgtaaaaatcata |
51 |
Q |
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| T |
36836464 |
tcatgaacaaatttagttgaatgtaaaaatcata |
36836497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 35644005 - 35644045
Alignment:
| Q |
42 |
aaaaatcatactccctccgtccctcaatacttaatctattt |
82 |
Q |
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| T |
35644005 |
aaaaaacatactccctccgtccctcaatacttgacctattt |
35644045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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