View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13986_high_6 (Length: 285)

Name: NF13986_high_6

Description: NF13986

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF13986_high_6

[»] chr2 (2 HSPs)

Target: chr2 (Bit Score: 149; Significance: 9e-79; HSPs: 2)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 149; E-Value: 9e-79

Query Start/End: Original strand, 8 - 160

Target Start/End: Original strand, 25902477 - 25902629

Alignment:

Q	8	tgaaaagaagatgctgcactattcggggacgatgaaagcgcaatctcatcatccgccataacaaccaccgtcgccggtggaaccacgttcacatccaatc	107	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	25902477	tgaaaagaagatgctgcactattcggggacgatgaaagcgcaatctcatcatccgccataacaaccaccgtcgccggtggaaccacgttcacatccaatc	25902576	T

Q	108	cccttgaacaacctccaaactcggttgataataaattacctattgcaaaaaca	160	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	25902577	cccttgaacaacctccaaactcggttgataatagattacctattgcaaaaaca	25902629	T

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Target: chr2; HSP #2

Raw Score: 67; E-Value: 8e-30

Query Start/End: Original strand, 202 - 268

Target Start/End: Original strand, 25902676 - 25902742

Alignment:

Q	202	aaaatatttgtaactttttaggaagtgggtcgttaccgttttgagaaggattattccatgggaatga	268	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	25902676	aaaatatttgtaactttttaggaagtgggtcgttaccgttttgagaaggattattccatgggaatga	25902742	T

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