View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13986_high_7 (Length: 245)
Name: NF13986_high_7
Description: NF13986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13986_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 34825901 - 34826129
Alignment:
| Q |
8 |
attatactagatttactgcagttgcaccaagactaattgactattcaattccaggggcattttgagctttttgattttcatgcatcatgacatattcacg |
107 |
Q |
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| T |
34825901 |
attattctagatttactgcagttgcaccaagactaattgactattcaattccaggggcattttgagctttttgattttcatgcatcataacatattcacg |
34826000 |
T |
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| Q |
108 |
gagtctctcagctttttgtctcattgaatcaataatctcttccgtttcatcatgtatttgttttggcaaataaacctccaagaaatcaaaccactcacct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34826001 |
gagtctctcagctttttgtctcattgaatcaataatatcttccgtttcatcatgtatttgttttggcaaataaacctccaagaaatcaaaccactcacct |
34826100 |
T |
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| Q |
208 |
aaactcatcttctccaaatcaagcatatt |
236 |
Q |
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||||||||||||||||||||| ||||||| |
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| T |
34826101 |
aaactcatcttctccaaatcaggcatatt |
34826129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 72 - 228
Target Start/End: Original strand, 34822896 - 34823052
Alignment:
| Q |
72 |
agctttttgattttcatgcatcatgacatattcacggagtctctcagctttttgtctcattgaatcaataatctcttccgtttcatcatgtatttgtttt |
171 |
Q |
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|||||| ||||| | || ||| ||||| || || ||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
34822896 |
agctttctgattctgatacattatgacgtactcgcggagtctctcggctttttgtttcatggaatcaataatctcttccgtttcatcatgtatctgtttt |
34822995 |
T |
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| Q |
172 |
ggcaaataaacctccaagaaatcaaaccactcacctaaactcatcttctccaaatca |
228 |
Q |
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| T |
34822996 |
ggcaaataaacttccaagaaatcaaaccactcacctaaattcatcttctccaaatca |
34823052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 72 - 228
Target Start/End: Original strand, 28945533 - 28945689
Alignment:
| Q |
72 |
agctttttgattttcatgcatcatgacatattcacggagtctctcagctttttgtctcattgaatcaataatctcttccgtttcatcatgtatttgtttt |
171 |
Q |
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|||||| ||||| | || ||| ||||| || || ||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
28945533 |
agctttctgattctgatacattatgacgtactcgcggagtctctcggctttttgtgtcatggaatcaataatctcttccgtttcatcatgtatctgtttt |
28945632 |
T |
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| Q |
172 |
ggcaaataaacctccaagaaatcaaaccactcacctaaactcatcttctccaaatca |
228 |
Q |
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| T |
28945633 |
ggcaaataaacttccaagaaatcaaaccactcacctaaattcatcttctccaaatca |
28945689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 106 - 228
Target Start/End: Complemental strand, 42233096 - 42232974
Alignment:
| Q |
106 |
cggagtctctcagctttttgtctcattgaatcaataatctcttccgtttcatcatgtatttgttttggcaaataaacctccaagaaatcaaaccactcac |
205 |
Q |
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||||||| ||| |||||||||||||| |||||||| ||||||| ||||||||||||||| ||||| |||||| |||| |||||||||||||||||||||| |
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| T |
42233096 |
cggagtccctcggctttttgtctcatggaatcaatgatctctttcgtttcatcatgtatctgtttcggcaaacaaacttccaagaaatcaaaccactcac |
42232997 |
T |
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| Q |
206 |
ctaaactcatcttctccaaatca |
228 |
Q |
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||||||| ||||||||||||||| |
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| T |
42232996 |
ctaaactaatcttctccaaatca |
42232974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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