View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13986_high_8 (Length: 240)

Name: NF13986_high_8
Description: NF13986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13986_high_8
NF13986_high_8
[»] chr7 (4 HSPs)
chr7 (1-205)||(7240947-7241151)
chr7 (113-143)||(1885587-1885617)
chr7 (117-158)||(2002077-2002118)
chr7 (112-144)||(38134420-38134452)
[»] chr6 (2 HSPs)
chr6 (105-158)||(9024176-9024229)
chr6 (112-140)||(17168907-17168935)
[»] chr1 (3 HSPs)
chr1 (112-156)||(30847722-30847766)
chr1 (113-143)||(24462285-24462315)
chr1 (112-157)||(3921680-3921725)
[»] chr2 (3 HSPs)
chr2 (112-158)||(18570985-18571031)
chr2 (117-157)||(37402085-37402125)
chr2 (112-144)||(11308018-11308050)
[»] chr4 (6 HSPs)
chr4 (112-157)||(31552458-31552503)
chr4 (112-156)||(18513243-18513287)
chr4 (114-143)||(10164869-10164898)
chr4 (112-144)||(5654605-5654637)
chr4 (112-144)||(10546161-10546193)
chr4 (112-144)||(34589720-34589752)
[»] chr3 (3 HSPs)
chr3 (112-144)||(12704671-12704703)
chr3 (113-143)||(14338498-14338528)
chr3 (112-141)||(41319327-41319356)
[»] chr5 (6 HSPs)
chr5 (112-151)||(16881149-16881188)
chr5 (117-158)||(38533151-38533192)
chr5 (112-141)||(38749580-38749609)
chr5 (112-144)||(4344755-4344787)
chr5 (112-144)||(11596469-11596501)
chr5 (112-144)||(43208288-43208320)
[»] chr8 (4 HSPs)
chr8 (106-144)||(12597798-12597836)
chr8 (104-141)||(10441208-10441245)
chr8 (112-161)||(34201043-34201092)
chr8 (112-144)||(29198493-29198525)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 7241151 - 7240947
Alignment:
Q  1 aaaatgaatttgtaaatgtgtttaaaataaagagctgcttttctaataagatgtattaatctatgaagcacgagcacatacaccagacacgacacaacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7241151 aaaatgaatttgtaaatgtgtttaaaataaagagctgcttttctaataagatgtattcatctatgaagcacgagcacatacaccagacacgacacaacaa 7241052  T
Q  101 caataatgatgatttgaaaaaatgacataattcaatgtaatcatctgtatcagtgtcggtgctaatgtaatcacatgtatcagtatgtatcatattggtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  7241051 caataatgatgatttgaaaaaatgacataattcaatgtaatcacctatatcagtgtcagtcctaatgtaatcacatgtatcagtatgtatcatattggtg 7240952  T
Q  201 tcgga 205  Q
    |||||    
T  7240951 tcgga 7240947  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 143
Target Start/End: Original strand, 1885587 - 1885617
Alignment:
Q  113 tttgaaaaaatgacataattcaatgtaatca 143  Q
    |||||||||||||||||||||||||||||||    
T  1885587 tttgaaaaaatgacataattcaatgtaatca 1885617  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 2002077 - 2002118
Alignment:
Q  117 aaaaaatgacataattcaatgtaatcatctgtatcagtgtcg 158  Q
    |||||||||||||| |||||||||| || |||||||||||||    
T  2002077 aaaaaatgacataaatcaatgtaattatatgtatcagtgtcg 2002118  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 38134452 - 38134420
Alignment:
Q  112 atttgaaaaaatgacataattcaatgtaatcat 144  Q
    |||||| ||||||||||||||||||||||||||    
T  38134452 atttgagaaaatgacataattcaatgtaatcat 38134420  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 9024229 - 9024176
Alignment:
Q  105 aatgatgatttgaaaaaatgacataattcaatgtaatcatctgtatcagtgtcg 158  Q
    |||||| |||||| |||||||||||||||||||||||||| ||| |||||||||    
T  9024229 aatgataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcg 9024176  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 17168907 - 17168935
Alignment:
Q  112 atttgaaaaaatgacataattcaatgtaa 140  Q
    |||||||||||||||||||||||||||||    
T  17168907 atttgaaaaaatgacataattcaatgtaa 17168935  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 30847766 - 30847722
Alignment:
Q  112 atttgaaaaaatgacataattcaatgtaatcatctgtatcagtgt 156  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||    
T  30847766 atttgaaaaaatgacataattcaatgtaatcatatgtgtcagtgt 30847722  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 143
Target Start/End: Complemental strand, 24462315 - 24462285
Alignment:
Q  113 tttgaaaaaatgacataattcaatgtaatca 143  Q
    |||||||||||||||||||||||||||||||    
T  24462315 tttgaaaaaatgacataattcaatgtaatca 24462285  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 3921680 - 3921725
Alignment:
Q  112 atttgaaaaaatgacataattcaatgtaatcatctgtatcagtgtc 157  Q
    |||||| ||||||||||||||||||||||||||  || ||||||||    
T  3921680 atttgagaaaatgacataattcaatgtaatcatgcgtgtcagtgtc 3921725  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 18570985 - 18571031
Alignment:
Q  112 atttgaaaaaatgacataattcaatgtaatcatctgtatcagtgtcg 158  Q
    |||||| |||||||||||||||||||||||||| ||| |||||||||    
T  18570985 atttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcg 18571031  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 37402125 - 37402085
Alignment:
Q  117 aaaaaatgacataattcaatgtaatcatctgtatcagtgtc 157  Q
    |||||||||||||||||||||||||||| ||| ||||||||    
T  37402125 aaaaaatgacataattcaatgtaatcatatgtgtcagtgtc 37402085  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 11308050 - 11308018
Alignment:
Q  112 atttgaaaaaatgacataattcaatgtaatcat 144  Q
    ||||||||||||||||||||||| |||||||||    
T  11308050 atttgaaaaaatgacataattcagtgtaatcat 11308018  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 31552503 - 31552458
Alignment:
Q  112 atttgaaaaaatgacataattcaatgtaatcatctgtatcagtgtc 157  Q
    |||| ||||||||||||||| |||||||||||| ||||||||||||    
T  31552503 atttcaaaaaatgacataatccaatgtaatcatatgtatcagtgtc 31552458  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 18513287 - 18513243
Alignment:
Q  112 atttgaaaaaatgacataattcaatgtaatcatctgtatcagtgt 156  Q
    |||||| |||||||||||||||||||||||||| ||| |||||||    
T  18513287 atttgagaaaatgacataattcaatgtaatcatatgtgtcagtgt 18513243  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 10164898 - 10164869
Alignment:
Q  114 ttgaaaaaatgacataattcaatgtaatca 143  Q
    ||||||||||||||||||||||||||||||    
T  10164898 ttgaaaaaatgacataattcaatgtaatca 10164869  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 5654637 - 5654605
Alignment:
Q  112 atttgaaaaaatgacataattcaatgtaatcat 144  Q
    |||||| ||||||||||||||||||||||||||    
T  5654637 atttgagaaaatgacataattcaatgtaatcat 5654605  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 10546161 - 10546193
Alignment:
Q  112 atttgaaaaaatgacataattcaatgtaatcat 144  Q
    |||||| ||||||||||||||||||||||||||    
T  10546161 atttgagaaaatgacataattcaatgtaatcat 10546193  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 34589752 - 34589720
Alignment:
Q  112 atttgaaaaaatgacataattcaatgtaatcat 144  Q
    |||||| ||||||||||||||||||||||||||    
T  34589752 atttgagaaaatgacataattcaatgtaatcat 34589720  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 12704703 - 12704671
Alignment:
Q  112 atttgaaaaaatgacataattcaatgtaatcat 144  Q
    |||||||||||||||||||||||||||||||||    
T  12704703 atttgaaaaaatgacataattcaatgtaatcat 12704671  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 143
Target Start/End: Complemental strand, 14338528 - 14338498
Alignment:
Q  113 tttgaaaaaatgacataattcaatgtaatca 143  Q
    |||||||||||||||||||||||||||||||    
T  14338528 tttgaaaaaatgacataattcaatgtaatca 14338498  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 41319356 - 41319327
Alignment:
Q  112 atttgaaaaaatgacataattcaatgtaat 141  Q
    ||||||||||||||||||||||||||||||    
T  41319356 atttgaaaaaatgacataattcaatgtaat 41319327  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 151
Target Start/End: Original strand, 16881149 - 16881188
Alignment:
Q  112 atttgaaaaaatgacataattcaatgtaatcatctgtatc 151  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  16881149 atttgaaaaaatgacataatttaatgtaatcatatgtatc 16881188  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 38533192 - 38533151
Alignment:
Q  117 aaaaaatgacataattcaatgtaatcatctgtatcagtgtcg 158  Q
    ||||||||||||| || ||||||||||| |||||||||||||    
T  38533192 aaaaaatgacatatttgaatgtaatcatgtgtatcagtgtcg 38533151  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 38749609 - 38749580
Alignment:
Q  112 atttgaaaaaatgacataattcaatgtaat 141  Q
    ||||||||||||||||||||||||||||||    
T  38749609 atttgaaaaaatgacataattcaatgtaat 38749580  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 4344755 - 4344787
Alignment:
Q  112 atttgaaaaaatgacataattcaatgtaatcat 144  Q
    ||||||||||||||||||||||| |||||||||    
T  4344755 atttgaaaaaatgacataattcagtgtaatcat 4344787  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 11596501 - 11596469
Alignment:
Q  112 atttgaaaaaatgacataattcaatgtaatcat 144  Q
    |||||| ||||||||||||||||||||||||||    
T  11596501 atttgagaaaatgacataattcaatgtaatcat 11596469  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 43208320 - 43208288
Alignment:
Q  112 atttgaaaaaatgacataattcaatgtaatcat 144  Q
    |||||| ||||||||||||||||||||||||||    
T  43208320 atttgagaaaatgacataattcaatgtaatcat 43208288  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 12597798 - 12597836
Alignment:
Q  106 atgatgatttgaaaaaatgacataattcaatgtaatcat 144  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  12597798 atgatgattttaaaaaataacataattcaatgtaatcat 12597836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 10441208 - 10441245
Alignment:
Q  104 taatgatgatttgaaaaaatgacataattcaatgtaat 141  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  10441208 taatgataatttgagaaaatgacataattcaatgtaat 10441245  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 34201092 - 34201043
Alignment:
Q  112 atttgaaaaaatgacataattcaatgtaatcatctgtatcagtgtcggtg 161  Q
    |||||| ||||||||||||||||||||||| || ||||| ||||| ||||    
T  34201092 atttgagaaaatgacataattcaatgtaattatatgtataagtgttggtg 34201043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 29198525 - 29198493
Alignment:
Q  112 atttgaaaaaatgacataattcaatgtaatcat 144  Q
    |||||| ||||||||||||||||||||||||||    
T  29198525 atttgagaaaatgacataattcaatgtaatcat 29198493  T

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