View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13986_low_12 (Length: 222)
Name: NF13986_low_12
Description: NF13986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13986_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 45350772 - 45350574
Alignment:
| Q |
9 |
atcatcaaactcaccgttactaaattgcttttcaataaaagtatcctctaagagcccatccaagtcatcgtgcaagttatatttttcatggtttttatca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45350772 |
atcatcaaactcaccgttactaaattgcttttcaataaaagtatcctctaagagcccatccaagtcatcgtgcaagttatatttttcatggtttttatca |
45350673 |
T |
|
| Q |
109 |
tagggttttcttgaagatagtccatctccatgaaaaatccatttcttataacttgcatcaaatccgtcacaaaacaaatgctcaaacacatcctctcga |
207 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45350672 |
tagggttttcttgaagatagtccctctccatgaaaaatccatttcttataacttgcatcaaatccgtcacaaaacaaatgctcaaacacatcctctcga |
45350574 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 2553879 - 2554077
Alignment:
| Q |
9 |
atcatcaaactcaccgttactaaattgcttttcaataaaagtatcctctaagagcccatccaagtcatcgtgcaagttatatttttcatggtttttatca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2553879 |
atcatcaaactcaccgttactaaattgcttttcaataaaagtatcctctaagagcccatccaagtcatcgtgcaagttatatttttcatggtttttatca |
2553978 |
T |
|
| Q |
109 |
tagggttttcttgaagatagtccatctccatgaaaaatccatttcttataacttgcatcaaatccgtcacaaaacaaatgctcaaacacatcctctcga |
207 |
Q |
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|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2553979 |
tagggttttcttgaagatagtccctctccatgaaaaatccatttcttataacttgcatcaaatccgtcacaaaacaaatgctcaaacacatcctctcga |
2554077 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 43602468 - 43602666
Alignment:
| Q |
9 |
atcatcaaactcaccgttactaaattgcttttcaataaaagtatcctctaagagcccatccaagtcatcgtgcaagttatatttttcatggtttttatca |
108 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43602468 |
atcatcaaactcaccgttactaaatttcttttcaataaaagtatcctctaagagcccatccaagtcatcgtgcaagttatatttttcatggtttttatca |
43602567 |
T |
|
| Q |
109 |
tagggttttcttgaagatagtccatctccatgaaaaatccatttcttataacttgcatcaaatccgtcacaaaacaaatgctcaaacacatcctctcga |
207 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43602568 |
tagggttttcttgaagatagtccctctccatgaaaaatccatttcttataacttgcatcaaatccgtcacaaaacaaatgctcaaacacatcctctcga |
43602666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 115 - 207
Target Start/End: Original strand, 1154094 - 1154186
Alignment:
| Q |
115 |
tttcttgaagatagtccatctccatgaaaaatccatttcttataacttgcatcaaatccgtcacaaaacaaatgctcaaacacatcctctcga |
207 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1154094 |
tttcttgaagatagtccctctccatgaaaaatccatttcttataacttgcatcaaatccgtcacaaaacaaatgctcaaacacatcctctcga |
1154186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 14668324 - 14668128
Alignment:
| Q |
9 |
atcatcaaactcaccgttactaaattgcttttcaataaaagtatcctctaagagcccatccaagtcatcgtgcaagttatatttttcatggttttt-atc |
107 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
14668324 |
atcatcaaactcaccattactaaattgtgtttcaataaaagtatcctctaagagcccatccaagtcatcgtgcaagttatatttttcatggttttttatc |
14668225 |
T |
|
| Q |
108 |
atagggttttcttgaagatagtccatctccatgaaaaatccatttcttataacttgcatcaaatccgtcacaaaacaaatgctcaaacacatcctct |
204 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14668224 |
atagggtgttcttgaagatagtccctctccatgaaaaatccatttcttataacttgcatcaaatccgtcacaaaacaaatgctcaaacacatcctct |
14668128 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 23759816 - 23759618
Alignment:
| Q |
9 |
atcatcaaactcaccgttactaaattgcttttcaataaaagtatcctctaagagcccatccaagtcatcgtgcaagttatatttttcatggtttttatca |
108 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
23759816 |
atcatcaaactcaccgttactaaattgtgtttcaataaaagtatcctctaagagcacatccaagccatcgtgcaagttatatttttcatggtttttatca |
23759717 |
T |
|
| Q |
109 |
tagggttttcttgaagatagtccatctccatgaaaaatccatttcttataacttgcatcaaatccgtcacaaaacaaatgctcaaacacatcctctcga |
207 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
23759716 |
tagggttttcttgaagatagtccctttccatgaaaaatccatttctcataacttgcatcaaatccgtcacaaaataaatgctcaaacacatcctctcga |
23759618 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 23825276 - 23825078
Alignment:
| Q |
9 |
atcatcaaactcaccgttactaaattgcttttcaataaaagtatcctctaagagcccatccaagtcatcgtgcaagttatatttttcatggtttttatca |
108 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
23825276 |
atcatcaaactcaccgttactaaattgtgtttcaataaaagtatcctctaagagcacatccaagccatcgtgcaagttatatttttcatggtttttatca |
23825177 |
T |
|
| Q |
109 |
tagggttttcttgaagatagtccatctccatgaaaaatccatttcttataacttgcatcaaatccgtcacaaaacaaatgctcaaacacatcctctcga |
207 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
23825176 |
tagggttttcttgaagatagtccctttccatgaaaaatccatttctcataacttgcatcaaatccgtcacaaaataaatgctcaaacacatcctctcga |
23825078 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 10023638 - 10023785
Alignment:
| Q |
9 |
atcatcaaactcaccgttactaaattgcttttcaataaaagtatcctctaagagcccatccaagtcatcgtgcaagttatatttttcatggtttttatca |
108 |
Q |
| |
|
||||||||||||||| |||||||||||| || ||||||||||| |||||||||||||||||| || || ||||||||||||||||||| ||||||||| |
|
|
| T |
10023638 |
atcatcaaactcacctttactaaattgcgttgtaataaaagtatactctaagagcccatccaaatcttcatgcaagttatatttttcatcatttttatca |
10023737 |
T |
|
| Q |
109 |
tagggttttcttgaagatagtccatctccatgaaaaatccatttcttata |
158 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
10023738 |
tagggttttcttgaagatagtcc--ttccatgaaaaattcatttcttata |
10023785 |
T |
|
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