View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13987_high_3 (Length: 516)

Name: NF13987_high_3
Description: NF13987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13987_high_3
NF13987_high_3
[»] chr7 (3 HSPs)
chr7 (18-500)||(697553-698030)
chr7 (202-278)||(25066569-25066646)
chr7 (205-241)||(12846644-12846680)
[»] chr8 (2 HSPs)
chr8 (202-278)||(44953023-44953099)
chr8 (199-256)||(7970063-7970120)
[»] chr5 (2 HSPs)
chr5 (305-345)||(9358508-9358548)
chr5 (205-241)||(33281635-33281671)
[»] chr4 (2 HSPs)
chr4 (202-284)||(7817773-7817856)
chr4 (197-241)||(43457464-43457508)
[»] chr3 (4 HSPs)
chr3 (203-284)||(23482671-23482753)
chr3 (202-269)||(50508404-50508472)
chr3 (205-278)||(7681023-7681097)
chr3 (205-241)||(33711952-33711988)
[»] scaffold0896 (1 HSPs)
scaffold0896 (202-278)||(3757-3834)
[»] chr6 (2 HSPs)
chr6 (202-278)||(7080972-7081049)
chr6 (202-278)||(8811310-8811387)


Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 500
Target Start/End: Original strand, 697553 - 698030
Alignment:
Q  18 aaataagaagggaaaaagtgtaaggctgctgcaaaatcaaattggcaggcttattagtgagagagagtgttggtatatatcaaatgaagagatttcgaga 117  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  697553 aaataagaagggaaaaagtgtaaggctgccgcaaaatcgaattggcaggcttattagtgagagagagtgttggtatatatcaaatgaagagatttcgaga 697652  T
Q  118 catgtgtattgttggattgatgaagtgaaagagaaaattatgtctgaaaatatagaaatgacgttcttatttgagagtattttcgaatttttctaattac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  697653 catgtgtattgttggattgatgaagtgaaagagaaaattatgtctgaaaatatagaaatgacgttcttatttgagagtatttttgaatttttctaattac 697752  T
Q  218 accctatgtatttctggttacaccataaaacgaaaaaatatccttaaataaaatttaatttaatcttcagtttcttcatcttggagtaaagtgaatctga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  697753 accctatgtatttctggttacaccataaaacgaaaaaatatccttaaataaaatttaatttaatcttcagtttcttcatcttggagtaaagtgaatctga 697852  T
Q  318 agcattgctttgatccaatggctgcagtcaaaataataacacagtcacaaaaaccagtaagtaaatataagtaatttgactgtttaattccttgcacccc 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |     |||||||||||||||||||||||||||||||||||||||||    
T  697853 agcattgctttgatccaatggctgcagtcaaaataataacacagtcacaacacc-----agtaaatataagtaatttgactgtttaattccttgcacccc 697947  T
Q  418 acgttccttggtcagcacggttccttgttattacaataatatataaacttcttctcacttctacttagaatcctagtcccccc 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  697948 acgttccttggtcagcacggttccttgttattacaataatatataaacttcttctcacttctacttagaatcctagtcccccc 698030  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 25066646 - 25066569
Alignment:
Q  202 gaatttttctaattacaccctatgtatttctggttacaccataaaacga-aaaaatatccttaaataaaatttaattt 278  Q
    ||||||||||| ||||||||||| || |||| |||||||| ||||| || |||| ||||||| | |||||||||||||    
T  25066646 gaatttttctagttacaccctatttaattcttgttacaccctaaaatgacaaaattatcctttagtaaaatttaattt 25066569  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 12846644 - 12846680
Alignment:
Q  205 tttttctaattacaccctatgtatttctggttacacc 241  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  12846644 tttttctatttacaccctatatatttctggttacacc 12846680  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 44953023 - 44953099
Alignment:
Q  202 gaatttttctaattacaccctatgtatttctggttacaccataaaacgaaaaaatatccttaaataaaatttaattt 278  Q
    ||||||||||||| ||||||||||||||  |||||||||| ||||| || ||| |||| |||||| |||||||||||    
T  44953023 gaatttttctaatcacaccctatgtattcatggttacaccttaaaatgataaattatctttaaatgaaatttaattt 44953099  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 7970120 - 7970063
Alignment:
Q  199 ttcgaatttttctaattacaccctatgtatttctggttacaccataaaacgaaaaaat 256  Q
    ||||| |||||||||||||||||| | |||||||| ||||||| ||||| || |||||    
T  7970120 ttcgactttttctaattacaccctttatatttctgattacaccctaaaatgacaaaat 7970063  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 305 - 345
Target Start/End: Complemental strand, 9358548 - 9358508
Alignment:
Q  305 aaagtgaatctgaagcattgctttgatccaatggctgcagt 345  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9358548 aaagtgaatctgaagcattgctttgatccaatggctgcagt 9358508  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 33281671 - 33281635
Alignment:
Q  205 tttttctaattacaccctatgtatttctggttacacc 241  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  33281671 tttttctatttacaccctatgtttttctggttacacc 33281635  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 202 - 284
Target Start/End: Original strand, 7817773 - 7817856
Alignment:
Q  202 gaatttttctaattacaccctatgtatttctggttacaccataaaacgaaaaaat-atccttaaataaaatttaatttaatctt 284  Q
    ||||||||||||||||||  || ||||| ||  ||||||  ||||| || ||||| ||||||||||||||||||||||||||||    
T  7817773 gaatttttctaattacacaatacgtattcctaattacactctaaaatgacaaaattatccttaaataaaatttaatttaatctt 7817856  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 43457464 - 43457508
Alignment:
Q  197 ttttcgaatttttctaattacaccctatgtatttctggttacacc 241  Q
    ||||||| |||||||| | ||||||||| ||||||||||||||||    
T  43457464 ttttcgagtttttctattcacaccctatatatttctggttacacc 43457508  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 23482671 - 23482753
Alignment:
Q  203 aatttttctaattacaccctatgtatttctggttacaccataaaacgaaaaaat-atccttaaataaaatttaatttaatctt 284  Q
    ||||||||||||||||    |||||||  |||||||||  ||||| || ||||| ||||||||||||||||||||||||||||    
T  23482671 aatttttctaattacatttcatgtattcatggttacacactaaaatgataaaattatccttaaataaaatttaatttaatctt 23482753  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 269
Target Start/End: Complemental strand, 50508472 - 50508404
Alignment:
Q  202 gaatttttctaattacaccctatgtatttctggttacaccataaaacga-aaaaatatccttaaataaa 269  Q
    |||||||||||||||||||| ||  ||| ||||||||||| ||||| || |||| ||||||||||||||    
T  50508472 gaatttttctaattacaccccatacattcctggttacaccctaaaatgataaaattatccttaaataaa 50508404  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 7681097 - 7681023
Alignment:
Q  205 tttttctaattacaccctatgtatttctggttacaccataaaacga-aaaaatatccttaaataaaatttaattt 278  Q
    |||||||||||||||||||| || |||||||| |||| ||||| || |||| || ||||  ||||||||||||||    
T  7681097 tttttctaattacaccctatttaattctggttgcaccctaaaatgacaaaattacccttccataaaatttaattt 7681023  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 33711952 - 33711988
Alignment:
Q  205 tttttctaattacaccctatgtatttctggttacacc 241  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  33711952 tttttctatttacaccctatgtttttctggttacacc 33711988  T

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Target: scaffold0896 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 3834 - 3757
Alignment:
Q  202 gaatttttctaattacaccctatgtatttctggttacaccataaaacga-aaaaatatccttaaataaaatttaattt 278  Q
    ||||||||||||||||||||  | |||| |||||||||||  |||| || |||| |||||||| ||||||||| ||||    
T  3834 gaatttttctaattacaccccgtatattcctggttacaccccaaaatgataaaattatccttacataaaatttgattt 3757  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 7080972 - 7081049
Alignment:
Q  202 gaatttttctaattacaccctatgtatttctggttacaccataaaacga-aaaaatatccttaaataaaatttaattt 278  Q
    |||||||||||||||||| || | |||| |||||||||||  |||| || |||| |||||||| ||||||||| ||||    
T  7080972 gaatttttctaattacacactgtatattcctggttacaccccaaaatgataaaattatccttagataaaatttgattt 7081049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 8811387 - 8811310
Alignment:
Q  202 gaatttttctaattacaccctatgtatttctggttacaccataaaacga-aaaaatatccttaaataaaatttaattt 278  Q
    ||||||||||||||||||||  | |||| |||||||||||  |||| || |||| |||||||| ||||||||| ||||    
T  8811387 gaatttttctaattacaccccgtatattcctggttacaccccaaaatgataaaattatccttacataaaatttgattt 8811310  T

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