View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13987_high_4 (Length: 501)
Name: NF13987_high_4
Description: NF13987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13987_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 482
Target Start/End: Original strand, 3289311 - 3289773
Alignment:
| Q |
18 |
gttgaatggtattaacttcacttttatcttatcccttctatctagtattttaatcttcatttttgtgnnnnnnnnnattgnnnnnnnnnnnnggattatt |
117 |
Q |
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| T |
3289311 |
gttgaatggtattaacttcacttttatcttatcccttctatctactattttaatcttcatttttgtgttttttt--attgaaaaataaaaaaggattatt |
3289408 |
T |
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| Q |
118 |
gctatggctttggtgtggcaatatggggagaaatctgggtatgaagcttggaagggtctttcttgggggatggtaagtcttttcattttaattcttttnn |
217 |
Q |
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| T |
3289409 |
gctatggctttggtgtggcaatatggagagaaatctgggtatgaagcttggaagggtctttcttgggggatggtaagtcttttaattttaattctttaaa |
3289508 |
T |
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| Q |
218 |
nnnnnn-ttattattattattttggcacaaaataagataacaaattcagtgattaacgtagttgaggtagttcaaattgtttgttgttgcttgaaaacat |
316 |
Q |
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| T |
3289509 |
aaaaaaattattattattattttgacacaaaataagataacaaattgagtgattaacgtagttgaggtagttcaaattgtttgttgttgcttgaaaacat |
3289608 |
T |
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| Q |
317 |
acatgttggagaagtcccacatttcttataatttttaaggaagaaggagaccaagactatttatataacactttagactagtatctgacnnnnnnncttt |
416 |
Q |
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| T |
3289609 |
acatgttggagaagtcccacatttcttataatttttaaggaagaaggagaccaagactatttatataacactttagactagtatctgac-ttttttcttt |
3289707 |
T |
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| Q |
417 |
tctcttgcgctcttttcttagagtgttgtgagatgtagttaggtattttctttggacggtctgggt |
482 |
Q |
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| T |
3289708 |
tctcttgcgctcttttcttagagtgttgtgagatgtagttaggtattttctttggacggtgtgggt |
3289773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 1605302 - 1605257
Alignment:
| Q |
426 |
ctcttttcttagagtgttgtgagatgtagttaggtattttctttgg |
471 |
Q |
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| T |
1605302 |
ctcttgtcttagagtgttatgagatgtagttaggtattttctttgg |
1605257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 18780034 - 18779990
Alignment:
| Q |
427 |
tcttttcttagagtgttgtgagatgtagttaggtattttctttgg |
471 |
Q |
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| T |
18780034 |
tcttgtcttagagtgttgtgagatgtagttagatattttctttgg |
18779990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 472
Target Start/End: Original strand, 25078304 - 25078350
Alignment:
| Q |
426 |
ctcttttcttagagtgttgtgagatgtagttaggtattttctttgga |
472 |
Q |
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| T |
25078304 |
ctcttgtcttagagtgttgtgagatgtaattaggtatttgctttgga |
25078350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 470
Target Start/End: Complemental strand, 14437262 - 14437218
Alignment:
| Q |
426 |
ctcttttcttagagtgttgtgagatgtagttaggtattttctttg |
470 |
Q |
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| T |
14437262 |
ctcttgtcttaaagtgttgtgagatgtagttaggtatttactttg |
14437218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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