View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13987_high_6 (Length: 474)
Name: NF13987_high_6
Description: NF13987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13987_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 435
Target Start/End: Complemental strand, 51140584 - 51140132
Alignment:
| Q |
7 |
ctaacaaaactgggactcaattgtctggatacattgattatacctctcctcaactttgttagctgacattgttatagtatcatgtttgtttaaggtttaa |
106 |
Q |
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| T |
51140584 |
ctaacaaaactgggactcaattgtctggatacattgattataactctcctcaactttgttagctgacattgttatagtatcatgtttgtttaaggtttaa |
51140485 |
T |
|
| Q |
107 |
gattttcattcatgtgaatgcattggtgg------------------tttgttacaagattgagaaatcattattcttaagt---ataaggtttttggga |
185 |
Q |
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| T |
51140484 |
gattttcattcatgtgaatgcattggcggagaatgagtatacctatctttattacaagattaagaaatcattattcttgagtataataaggtttttggga |
51140385 |
T |
|
| Q |
186 |
atgaaataacttcgcataacattaaatattctcatgaaattattttcaagttaaaggacagtcaggaaagtgaatccctatcaaattttgtatacnnnnn |
285 |
Q |
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| T |
51140384 |
atgaaataacttcgcataactttcaatattctcatgaaattattttcaagttaaaggacactcaggaaagtgaatccctgtcaaattttgtatacttttt |
51140285 |
T |
|
| Q |
286 |
nnnaaaagaaaatatcatcc---annnnnnnnnnaagaatactaaatggcaaatagnnnnnnnnaacgatacccaaaaatcaaatttcaatctttatatt |
382 |
Q |
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| T |
51140284 |
tttaaaagaaaatatcatccttttttttttttgtaagaatactaaatggcaaataggtttttttaactatacccaaaaatcaaatttcaatctttatatt |
51140185 |
T |
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| Q |
383 |
tccgaatacgttgttcataaggataatttttgagtccgtagaacaaatgcaaa |
435 |
Q |
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| T |
51140184 |
tccgaatacattgttcataaggataatttttgagtccgtagaacaaatgcaaa |
51140132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 30288553 - 30288444
Alignment:
| Q |
135 |
gtttgttacaagattgagaaatcattattcttaagtat-aaggtttttgggaatgaaataacttcgcataacattaaatattctcatgaaattattttca |
233 |
Q |
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|||||||||||||||||||||| |||||||| | ||| |||||| || |||| |||||||||| |||||| || || ||| |||||||||||| ||| |
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| T |
30288553 |
gtttgttacaagattgagaaattcttattcttgaatatcaaggttcatgagaataaaataacttctcataactttcaaaatttccatgaaattattctca |
30288454 |
T |
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| Q |
234 |
agttaaagga |
243 |
Q |
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|||||||||| |
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| T |
30288453 |
agttaaagga |
30288444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 35098798 - 35098740
Alignment:
| Q |
184 |
gaatgaaataacttcgcataacattaaatattctcatgaaattattttcaagttaaagg |
242 |
Q |
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||||||||||||||| ||||| || ||||||||||||||||||||| || |||||||| |
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| T |
35098798 |
gaatgaaataacttcttataactttgaatattctcatgaaattatttccatgttaaagg |
35098740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 6345954 - 6346055
Alignment:
| Q |
144 |
aagattgagaaatcattattcttaagta--taaggtttttgggaatgaaataacttcgcataacattaaatattctcatgaaattattttcaagttaaag |
241 |
Q |
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|||||||||||||||||||||||| ||| ||||||| || ||||||||||||||| | |||| ||||| | ||| | ||||||||| |||| ||||| |
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| T |
6345954 |
aagattgagaaatcattattcttaggtatctaaggttcttaggaatgaaataacttttcttaactttaaacaatcttacgaaattattcccaaggtaaag |
6346053 |
T |
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| Q |
242 |
ga |
243 |
Q |
| |
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|| |
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|
| T |
6346054 |
ga |
6346055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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