View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13987_high_9 (Length: 338)
Name: NF13987_high_9
Description: NF13987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13987_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 33 - 318
Target Start/End: Complemental strand, 28983592 - 28983307
Alignment:
| Q |
33 |
ctatgcatgatatattttcatattaaatttacatactgatacatctattctatgttcataactacatgttgatttttatattctataaattttacagatt |
132 |
Q |
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| T |
28983592 |
ctatgcatgatatattttcatattaaatttacatactgatacatctattctatgttcataactacatgttgatttttatattctataaattttacagatt |
28983493 |
T |
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| Q |
133 |
tccttctacatctttattccattactgtcttgaaaaaagttttcttgttagtaaagcatcagatatttgttaagttataatatattctcctttaatcata |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28983492 |
tccttctacatctttattccattactgtcttgaaaaaagttttcttgttagtaaagcatcagatatctgttaagttataatatattctcctttaatcata |
28983393 |
T |
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| Q |
233 |
acttggtttgccaccaaatgtcgttcttctccccaacatgaatgactacttgaccttatattttaatgctttgttctagaatgccc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28983392 |
acttggtttgccaccaaatgtcgttcttctccccaacatgaatgactacttgaccttatattttaatgctttgttctagaatgccc |
28983307 |
T |
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