View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13987_low_1 (Length: 594)
Name: NF13987_low_1
Description: NF13987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13987_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 8 - 578
Target Start/End: Complemental strand, 37789544 - 37788967
Alignment:
| Q |
8 |
cgaagaatattgccatgatgaaggtaatgcctggagtaaggttgaacattgcgaacataaatgttgatgaggttaaagtcatgccttcggcaaacatatt |
107 |
Q |
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| T |
37789544 |
cgaagaatattgccatgatgaaggtaatgcctggagtaaggttgaacatagcgaacataaatgttgatgaggttaaagtcatgccttcggcaaacatatt |
37789445 |
T |
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| Q |
108 |
cataaataaacttcccctgaaataatacatgacaaattaagagtgaaaatacattctagtcgatgaaaaaatggggttcactttgatcccttggaaaaga |
207 |
Q |
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| T |
37789444 |
cataaataaacttcccctggaataatacatgacaaattaagagtgaaaatacattctagtcgatgaaaata--gggttcactttgatcccttaaaaaaga |
37789347 |
T |
|
| Q |
208 |
aa-----gctccgttgtttttatctaagcagaacgcacaattattaatctctaagaaaaataaaccggattactttaatgacgaattgaaccttcatcta |
302 |
Q |
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| T |
37789346 |
aattaaagctaggttgtttttatctaagcagaacgcacaattattaatctctaagaaaaataaaccggattactttaatgacgaattgaaccttcatcta |
37789247 |
T |
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| Q |
303 |
aacattaaaaaacatggattttatctagtttgtcactccaccattccaccattttagatgcatgacatgtcattcaattaaggaacaacatgctcgttga |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37789246 |
aacattaaaaaacatggattttatctagtttgtcactccaccattccaccattttagatgcatgacatgtcattcaattaaggaacaacatgctcgttga |
37789147 |
T |
|
| Q |
403 |
caatacttgcaaattaaagaaaaacatttaggtctttgttgctcatttaaattcctagatagtggttgcttcttatatgaaggaaggatcttatacagct |
502 |
Q |
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| T |
37789146 |
caatacttgcaaattaaagaaaaacatttaggtctttgttgctcatttaaattcctagatagtggttgcttcttatatgaaggaaggatcttatacagct |
37789047 |
T |
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| Q |
503 |
gttgttgttggttccttcatatgtaaaacatat----cgatgaatgaaaagttgaagaatagttgcatacccaaacaatc |
578 |
Q |
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| T |
37789046 |
gttgttgttggttccttcatatgtaaaacatatcgatcgatgcatgaaaagttgaagaatagttgcatacccaaacaatc |
37788967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 37798346 - 37798219
Alignment:
| Q |
13 |
aatattgccatgatgaaggtaatgcctggagtaaggttgaacattgcgaacataaatgttgatgaggttaaagtcatgccttcggcaaacatattcataa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| ||||||||||| || || |||||| | | || |||| |
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| T |
37798346 |
aatattgccatgatgaaggtaatgcctggagtaaggttgaacatagctagcataaatgttgctgaggttaaagcaataccctcggcataaaggtttataa |
37798247 |
T |
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| Q |
113 |
ataaacttcccctgaaataatacatgac |
140 |
Q |
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||||||||||||||||||| ||| |||| |
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| T |
37798246 |
ataaacttcccctgaaatattacgtgac |
37798219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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