View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13987_low_11 (Length: 290)
Name: NF13987_low_11
Description: NF13987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13987_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 25658257 - 25658451
Alignment:
| Q |
1 |
tgttctgcagtatatctcatctaaaaagtttacaaaaataagaaaagttgttccctatttggttgaatctattacacataccaccatcgtatgttatatc |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25658257 |
tgttcttcagtatatctcatctaaaaagtttacaaaaataagaaaagttgttccctatttggttgaatcaattacacataccaccatcgtatgttatatc |
25658356 |
T |
|
| Q |
101 |
aactttaagtgcttgaatgtcttctttaaccataaaaactaagctcaattaaatatatgacaaaatgattattattcttggctaaatgtaatagt |
195 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25658357 |
aactttaagtacttgaatgtcttctttaaccataaaaactaagctccattaaatatatgacaaaatgaatattattcttggctaaatgtaatagt |
25658451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 25664662 - 25664856
Alignment:
| Q |
1 |
tgttctgcagtatatctcatctaaaaagtttacaaaaataagaaaagttgttccctatttggttgaatctattacacataccaccatcgtatgttatatc |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25664662 |
tgttctacagtatatctcatctaaaaagtttacaaaaataagaaaagttgttccctatttggttgaatcaattacacataccaccatcgtatgttatatc |
25664761 |
T |
|
| Q |
101 |
aactttaagtgcttgaatgtcttctttaaccataaaaactaagctcaattaaatatatgacaaaatgattattattcttggctaaatgtaatagt |
195 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25664762 |
aactttaagtacttgaatgtcttctttaaccataaaaactaagctccattaaatatatgacaaaatgaatattattcttggctaaatgtaatagt |
25664856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 25671067 - 25671261
Alignment:
| Q |
1 |
tgttctgcagtatatctcatctaaaaagtttacaaaaataagaaaagttgttccctatttggttgaatctattacacataccaccatcgtatgttatatc |
100 |
Q |
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|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25671067 |
tgttctacagtatatctcatctaaaaagtttacaaaaataagaaaagttgttccctatttggttgaatcaattacacataccaccatcgtatgttatatc |
25671166 |
T |
|
| Q |
101 |
aactttaagtgcttgaatgtcttctttaaccataaaaactaagctcaattaaatatatgacaaaatgattattattcttggctaaatgtaatagt |
195 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25671167 |
aactttaagtacttgaatgtcttctttaaccataaaaactaagctccattaaatatatgacaaaatgaatattattcttggctaaatgtaatagt |
25671261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 25677472 - 25677666
Alignment:
| Q |
1 |
tgttctgcagtatatctcatctaaaaagtttacaaaaataagaaaagttgttccctatttggttgaatctattacacataccaccatcgtatgttatatc |
100 |
Q |
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|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25677472 |
tgttctacagtatatctcatctaaaaagtttacaaaaataagaaaagttgttccctatttggttgaatcaattacacataccaccatcgtatgttatatc |
25677571 |
T |
|
| Q |
101 |
aactttaagtgcttgaatgtcttctttaaccataaaaactaagctcaattaaatatatgacaaaatgattattattcttggctaaatgtaatagt |
195 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25677572 |
aactttaagtacttgaatgtcttctttaaccataaaaactaagctccattaaatatatgacaaaatgaatattattcttggctaaatgtaatagt |
25677666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 25684146 - 25684340
Alignment:
| Q |
1 |
tgttctgcagtatatctcatctaaaaagtttacaaaaataagaaaagttgttccctatttggttgaatctattacacataccaccatcgtatgttatatc |
100 |
Q |
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|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25684146 |
tgttctacagtatatctcatctaaaaagtttacaaaaataagaaaagttgttccctatttggttgaatcaattacacataccaccatcgtatgttatatc |
25684245 |
T |
|
| Q |
101 |
aactttaagtgcttgaatgtcttctttaaccataaaaactaagctcaattaaatatatgacaaaatgattattattcttggctaaatgtaatagt |
195 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
25684246 |
aactttaagtacttgaatgtcttctttaaccataaaaactaagctccattaaatatatgacaaaatgaatattattcttggctaaatgtaatagt |
25684340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 25658475 - 25658528
Alignment:
| Q |
222 |
atcttcagtcattaatcaaagaaggagccgtggagctagtgattcctggaaact |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25658475 |
atcttcagtcattaatcaaagaaggagccgtggagctagtgattcctggaaact |
25658528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 25664880 - 25664933
Alignment:
| Q |
222 |
atcttcagtcattaatcaaagaaggagccgtggagctagtgattcctggaaact |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25664880 |
atcttcagtcattaatcaaagaaggagccgtggagctagtgattcctggaaact |
25664933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 25671285 - 25671338
Alignment:
| Q |
222 |
atcttcagtcattaatcaaagaaggagccgtggagctagtgattcctggaaact |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25671285 |
atcttcagtcattaatcaaagaaggagccgtggagctagtgattcctggaaact |
25671338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 25677690 - 25677743
Alignment:
| Q |
222 |
atcttcagtcattaatcaaagaaggagccgtggagctagtgattcctggaaact |
275 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25677690 |
atcttcagtcattaatcaaagaaggagccgtggagctagtgattcctggaaact |
25677743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 25684366 - 25684419
Alignment:
| Q |
222 |
atcttcagtcattaatcaaagaaggagccgtggagctagtgattcctggaaact |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25684366 |
atcttcagtcattaatcaaagaaggagccgtggagctagtgattcctggaaact |
25684419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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