View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13987_low_13 (Length: 260)
Name: NF13987_low_13
Description: NF13987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13987_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 5158285 - 5158058
Alignment:
| Q |
14 |
tgagatgaatcaccatcatttccttatttaatactataggactcatgcacttagcatggagtcttgaagattttaaaaatcaacttcaattcccaaaatg |
113 |
Q |
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| T |
5158285 |
tgagatgaatcaccat---ttccttatttaatactataggactcatgcacttagcatggagtcttgaagattttaaaactcaacttcaattcccaaaatg |
5158189 |
T |
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| Q |
114 |
agatgttcatgcaagtatttaaatac--ttgttacaggggcatgtttggttcaaaagcagaaaacttgaggagagaatgaattttgatagaaaaattata |
211 |
Q |
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| T |
5158188 |
agatgttcatgcaagtatttaaatacttttgttacaggggcatgtttggttcaaaagcagaaaacttgaggagagaatgaattttgatagaaaaattata |
5158089 |
T |
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| Q |
212 |
aatttatttctcacacttgtaataattaatg |
242 |
Q |
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| T |
5158088 |
aatttatttctcacacttgtaataattaatg |
5158058 |
T |
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