View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13987_low_14 (Length: 255)
Name: NF13987_low_14
Description: NF13987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13987_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 10968633 - 10968858
Alignment:
| Q |
12 |
caaaggctgaacaaggtgattttggttgaggagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatc |
111 |
Q |
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| T |
10968633 |
caaaggctgaacaaggtgattttggttgacgagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatc |
10968732 |
T |
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| Q |
112 |
gaattaaggaattaatggactccgataaagggaaagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaag |
211 |
Q |
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| T |
10968733 |
gaattaaggaattaatggactccgataaagggaaagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaag |
10968832 |
T |
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| Q |
212 |
ttcacttgttgctttgaataatctgg |
237 |
Q |
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| T |
10968833 |
ttcacttgttgctttgaataatctgg |
10968858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 10982583 - 10982803
Alignment:
| Q |
12 |
caaaggctgaacaaggtgattttggttgaggagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatc |
111 |
Q |
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| T |
10982583 |
caaaggctgaacaaggtgattttggttgaggagatgaaggttgctttggaattgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatc |
10982682 |
T |
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| Q |
112 |
gaattaaggaattaatggactccgataaagggaaagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaag |
211 |
Q |
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| T |
10982683 |
aaattaaggaattaatggactccgataaggggaaagagattagacaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaag |
10982782 |
T |
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| Q |
212 |
ttcacttgttgctttgaataa |
232 |
Q |
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| T |
10982783 |
ttcccttgtcgctttgaataa |
10982803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 11002813 - 11003030
Alignment:
| Q |
12 |
caaaggctgaacaaggtgattttggttgaggagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatc |
111 |
Q |
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|||||| ||||||| |||||||||||||||| |||||||| ||||||||||| || | |||||| | |||||||||||||||| ||||| ||||| |
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| T |
11002813 |
caaaggttgaacaaaatgattttggttgaggaaatgaaggtggctttggaactaaatgggtcaaaaaaagggtttgtgagtggaaatgagttgggggaga |
11002912 |
T |
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| Q |
112 |
gaattaaggaattaatggactccgataaagggaaagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaag |
211 |
Q |
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| T |
11002913 |
gagttaaggagttgatggaatcagaaaaagggaaagagattagagagacaattttgaagatgaaaacaagtgctaaggaggcaaaaggaggaggtggatc |
11003012 |
T |
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| Q |
212 |
ttcacttgttgctttgaa |
229 |
Q |
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| T |
11003013 |
ttctcttgttgatttgaa |
11003030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 229
Target Start/End: Original strand, 11079996 - 11080171
Alignment:
| Q |
54 |
gctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaaggaattaatggactccgataaagggaaagagatta |
153 |
Q |
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||||||||| |||| || |||||||| ||||||||||||| || ||||| ||||| || ||||||| || ||||| || || || ||||||||| ||| |
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| T |
11079996 |
gctttggaattgaatgagtcaaaagatgggtttgtgagtgaaaatgagttgggggagagagttaaggagttgatggaatcagaaaaggggaaagaggtta |
11080095 |
T |
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| Q |
154 |
ggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcacttgttgctttgaa |
229 |
Q |
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| T |
11080096 |
gagagacaattttgaagatgaaaataagtgctaaggaagcaagaggaggaggtggatcttctcttgttgatttgaa |
11080171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 11019344 - 11019411
Alignment:
| Q |
162 |
attttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcacttgttgctttgaa |
229 |
Q |
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||||| || ||||||||||||||||| |||||||||| || ||||||| ||| ||||||| |||||| |
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| T |
11019344 |
attttgaaaatgaaaataagtgctaaggaggcaagaggaggaggtggatcttctcttgttgatttgaa |
11019411 |
T |
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