View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13987_low_16 (Length: 246)
Name: NF13987_low_16
Description: NF13987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13987_low_16 |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 19839738 - 19839508
Alignment:
| Q |
16 |
ataaaatcaccaaattcagaattagacaatgagacttcgtttctgatagcatagctacaagtatcaccttgagtctcaagtaaacagactttgtcactag |
115 |
Q |
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| T |
19839738 |
ataaaatcaccaaattcagaattagacaatgagacttcgtttctgatagcatagctacaactatcaccttgagtctcaagtaaacagactttgtcactag |
19839639 |
T |
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| Q |
116 |
caatccttgattcttttctcccatctgtgtctttcaaatctttctctaaatgcttagatttatcaattattctaatacaactgtactcttccaacacatc |
215 |
Q |
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| T |
19839638 |
caatccttgattcttttctcccatctgtgtctttcaaatctttctctaaatgcttagatttatcaattattctaatacaactgtactcttccaacacatc |
19839539 |
T |
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| Q |
216 |
ctgacaattctcaacacatatggaaggaaca |
246 |
Q |
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| T |
19839538 |
ctgacaattctcaacacatatggaaagaaca |
19839508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 20035376 - 20035538
Alignment:
| Q |
16 |
ataaaatcaccaaattcagaattagacaatgagacttcgtttctgatagcatagctacaagtatcaccttgagtctcaagtaaacagactttgtcactag |
115 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||| | ||||||||||||| | ||||||||||||||| |||||| ||||||||||||| |
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| T |
20035376 |
ataaaatcaccaaattcagaattagacaaagagacttcatttctcacagcatagctacaaatttcaccttgagtctcagataaacaaactttgtcactag |
20035475 |
T |
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| Q |
116 |
caatccttgattcttttctcccatctgtgtctttcaaatctttctctaaatgcttagatttat |
178 |
Q |
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| T |
20035476 |
aaatccttgcttcttttataccatctgcatctttcaaatctttctctaaatgcttatatttat |
20035538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 19957384 - 19957297
Alignment:
| Q |
22 |
tcaccaaattcagaattagacaatgagacttcgtttctgatagcatagctacaagtatcaccttgagtctcaagtaaacagactttgt |
109 |
Q |
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| T |
19957384 |
tcaccaaattcagaactagacaaagagacttcatttctgatagcatcgctacagctttcaccttgagtctcagctaaacagactttgt |
19957297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 19819821 - 19819728
Alignment:
| Q |
16 |
ataaaatcaccaaattcagaattagacaatgagacttcgtttctgatagcatagctacaagtatcaccttgagtctcaagtaaacagactttgt |
109 |
Q |
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| T |
19819821 |
ataaaatcaccaaattcagaactagacaaagagacttgatttctgatagcatagcgacaactttcaacccgagtgtcagataaacagactttgt |
19819728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 246
Target Start/End: Complemental strand, 19819728 - 19819612
Alignment:
| Q |
130 |
tttctcccatctgtgtctttcaaatctttctctaaatgcttagatttatcaattattctaatacaactgtactcttccaacacatcctgacaattctcaa |
229 |
Q |
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| T |
19819728 |
tttctcccatctgcatctttcaaatctttctctaaatgcttacccttatggattatgccaccacaatagttctcttccaacacatgctgaaaatcctcga |
19819629 |
T |
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| Q |
230 |
cacatatggaaggaaca |
246 |
Q |
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| T |
19819628 |
cagatatggaaggaaca |
19819612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 246
Target Start/End: Complemental strand, 19957288 - 19957196
Alignment:
| Q |
154 |
tctttctctaaatgcttagatttatcaattattctaatacaactgtactcttccaacacatcctgacaattctcaacacatatggaaggaaca |
246 |
Q |
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| T |
19957288 |
tctttctctaaatgcttatatttatggattatgctaccacaattgtactcttccatcacatgccgacaatcctcaacagatatggagggaaca |
19957196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 19833115 - 19833067
Alignment:
| Q |
16 |
ataaaatcaccaaattcagaattagacaatgagacttcgtttctgatag |
64 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||| |||| |
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| T |
19833115 |
ataaaatcaccaaattcagaattagacaaagatacttcgtttctaatag |
19833067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 19850317 - 19850240
Alignment:
| Q |
16 |
ataaaatcaccaaattcagaattagacaatgagacttcgtttctgatagcatagctacaagtatcaccttgagtctca |
93 |
Q |
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| T |
19850317 |
ataaaatcaccaagttcagaattaggcaaagagactttgtttctgataccattgcttctgctttcaccttgagtctca |
19850240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 27473070 - 27473015
Alignment:
| Q |
16 |
ataaaatcaccaaattcagaattagacaatgagacttcgtttctgatagcatagct |
71 |
Q |
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||||||||||||| |||||||||||| || ||||||| |||||||||| ||||||| |
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| T |
27473070 |
ataaaatcaccaagttcagaattagaaaaagagactttgtttctgataccatagct |
27473015 |
T |
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