View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13987_low_17 (Length: 232)
Name: NF13987_low_17
Description: NF13987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13987_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 33112634 - 33112427
Alignment:
| Q |
9 |
ggttgtagtgtaattaccagtatcgtagccaaagagaaagccaccaataccagcagaaaaagcaagacgaaggacataaggatttttccatgaaagggaa |
108 |
Q |
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| T |
33112634 |
ggttgtagtgtaattaccagtgtcgtagccaaagagaaggccaccaataccagcagaaaaagcaagacgaaggacataaggatttttccatgaaagggaa |
33112535 |
T |
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| Q |
109 |
agacattctctaaaagctgagatatcaggcttatgtactccaccttccattgtgaaagaggttgaggtggtg---gtggtgaattggttctttggaaatt |
205 |
Q |
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| T |
33112534 |
agacattctctaaaagctgatatatcaggcttatgtacttcaccttccattttgaaagaggttgaggtggtggttgtggtgaattggttctttggaaatt |
33112435 |
T |
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| Q |
206 |
gagaaaca |
213 |
Q |
| |
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|||||||| |
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| T |
33112434 |
gagaaaca |
33112427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 33110936 - 33110888
Alignment:
| Q |
37 |
ccaaagagaaagccaccaataccagcagaaaaagcaagacgaaggacat |
85 |
Q |
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| T |
33110936 |
ccaaagagaaggccaccaataccagcagagaaagcaagtcgaaggacat |
33110888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 33110876 - 33110829
Alignment:
| Q |
111 |
acattctctaaaagctgagatatcaggcttatgtactccaccttccat |
158 |
Q |
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| T |
33110876 |
acattctctaaaagctgagatatcagcctctggtactccaccttccat |
33110829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 21562773 - 21562911
Alignment:
| Q |
21 |
attaccagtatcgtagccaaagagaaagccaccaataccagcagaaaaagcaagacgaaggacataaggatttttccatgaaagggaaagacattctcta |
120 |
Q |
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| T |
21562773 |
attaccagtatcatagccaaagagaaaaccaccaattccagcagagaaagcaagacgaagaacataaggatttttccatgatagagacaaacattctctg |
21562872 |
T |
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| Q |
121 |
aaagctgagatatcaggcttatgtactccaccttccatt |
159 |
Q |
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| T |
21562873 |
aaagcagatacatcagcttcaggtactcctccttccatt |
21562911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 21496724 - 21496836
Alignment:
| Q |
22 |
ttaccagtatcgtagccaaagagaaagccaccaataccagcagaaaaagcaagacgaaggacataaggatttttccatgaaagggaaagacattctctaa |
121 |
Q |
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| T |
21496724 |
ttaccagtatcatagccaaaaagaaggccaccaattccagcagaaaaagcaagacgaagaacataaggatttttccatgatagagataaacattctctga |
21496823 |
T |
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| Q |
122 |
aagctgagatatc |
134 |
Q |
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|||| || ||||| |
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| T |
21496824 |
aagcagacatatc |
21496836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 51032287 - 51032218
Alignment:
| Q |
32 |
cgtagccaaagagaaagccaccaataccagcagaaaaagcaagacgaaggacataaggatttttccatga |
101 |
Q |
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|||||||||| |||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
51032287 |
cgtagccaaaaagaagtccaccaattccagcagaaaaagcaagacgaagaacataaggatttttccatga |
51032218 |
T |
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