View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13987_low_19 (Length: 208)

Name: NF13987_low_19
Description: NF13987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13987_low_19
NF13987_low_19
[»] scaffold1064 (1 HSPs)
scaffold1064 (17-118)||(2477-2578)
[»] chr4 (5 HSPs)
chr4 (89-166)||(9238771-9238848)
chr4 (17-91)||(9238549-9238624)
chr4 (21-118)||(5706756-5706853)
chr4 (26-118)||(9880874-9880966)
chr4 (21-150)||(26904888-26905012)
[»] chr8 (1 HSPs)
chr8 (21-117)||(37787073-37787169)
[»] chr2 (3 HSPs)
chr2 (21-117)||(301926-302022)
chr2 (21-135)||(38099609-38099723)
chr2 (21-135)||(3461355-3461469)
[»] chr3 (2 HSPs)
chr3 (21-118)||(18641420-18641517)
chr3 (24-118)||(34982935-34983029)
[»] chr7 (2 HSPs)
chr7 (21-119)||(296659-296757)
chr7 (22-131)||(30380226-30380335)
[»] chr6 (2 HSPs)
chr6 (41-135)||(29011197-29011291)
chr6 (21-117)||(28248748-28248844)
[»] chr5 (1 HSPs)
chr5 (17-111)||(14233709-14233803)
[»] scaffold0038 (1 HSPs)
scaffold0038 (21-117)||(48910-49006)
[»] chr1 (1 HSPs)
chr1 (83-139)||(44536443-44536499)


Alignment Details
Target: scaffold1064 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 2477 - 2578
Alignment:
Q  17 attctcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtact 116  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2477 attctcaatgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtact 2576  T
Q  117 ca 118  Q
    ||    
T  2577 ca 2578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 9238771 - 9238848
Alignment:
Q  89 catgtagcaaatgtacctgcaatgtactcagatttacatgatgagagcgcaataacaggttggctttttgtaagtttg 166  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9238771 catgtagcaaatgtacctgcaatgtactcagattcacatgatgagagcgcaataacaggttggctttttgtaagtttg 9238848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 9238549 - 9238624
Alignment:
Q  17 attctcagtgtta-gaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacat 91  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  9238549 attctcagtgttaagaggcttcatcacttcacacttaatctctttcattgatgaatccaaccacaaagcttgacat 9238624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 5706853 - 5706756
Alignment:
Q  21 tcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactca 118  Q
    ||||||| |||||||| |||||||||||||| |||||||||||  ||||||||| ||| || |||||||| ||||||||||| |||| ||||||||||    
T  5706853 tcagtgtcagaggctttatcacttcacacttgagctctttcatcactgaatccagccataatgcttgacaagtagcaaatgttcctgtaatgtactca 5706756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 9880966 - 9880874
Alignment:
Q  26 gttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactca 118  Q
    |||||||||||||  | |||||| ||||||||||||||  ||||||| |||||||||| |||||| |||| |||||| ||| |||| ||||||    
T  9880966 gttagaggcttcacaatttcacatttaagctctttcatcactgaatctaaccacaaagtttgacaagtagaaaatgttcctacaatatactca 9880874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 26905012 - 26904888
Alignment:
Q  21 tcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactcaga 120  Q
    ||||||||||||| |||||    || ||||| | |||||||||  ||||||||||||| |  |||||||||||| ||||| ||| |||||| ||||||      
T  26905012 tcagtgttagaggtttcat----tcgcacttgatctctttcatcactgaatccaacca-atggcttgacatgtatcaaatatacttgcaatttactcaac 26904918  T
Q  121 tttacatgatgagagcgcaataacaggttg 150  Q
    || ||| ||||| || ||| ||||||||||    
T  26904917 ttcacaggatgaaagtgcactaacaggttg 26904888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 37787073 - 37787169
Alignment:
Q  21 tcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactc 117  Q
    |||||||||||||||||||||||||||||||||| || |||||  |||||| || ||| || |||||||| ||||||||||| ||||||||||||||    
T  37787073 tcagtgttagaggcttcatcacttcacacttaagttccttcatcactgaattcagccataatgcttgacaagtagcaaatgttcctgcaatgtactc 37787169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 5e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 302022 - 301926
Alignment:
Q  21 tcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactc 117  Q
    |||||||||||||||||||||||||||||||||| || |||||  |||||| || ||| || |||||||| ||||||||||| ||||||||||||||    
T  302022 tcagtgttagaggcttcatcacttcacacttaagttccttcatcactgaattcagccataatgcttgacaagtagcaaatgttcctgcaatgtactc 301926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 38099609 - 38099723
Alignment:
Q  21 tcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactcaga 120  Q
    ||||||||||||| ||||||||||||||||| |||||||||||   |||||||| | ||| |||||||||| | ||||||| ||||||||||||||||      
T  38099609 tcagtgttagaggtttcatcacttcacacttgagctctttcatcattgaatccagcaacagagcttgacatattgcaaatgcacctgcaatgtactcaac 38099708  T
Q  121 tttacatgatgagag 135  Q
    || |||| |||||||    
T  38099709 ttcacataatgagag 38099723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 3461469 - 3461355
Alignment:
Q  21 tcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactcaga 120  Q
    |||||||||||||||||||||||||||||||||  || |||||  ||||||||||||| |  |||||||| |||||||| ||||| |  ||||||||       
T  3461469 tcagtgttagaggcttcatcacttcacacttaaattccttcatcactgaatccaaccatagtgcttgacaagtagcaaaagtaccagttatgtactcttc 3461370  T
Q  121 tttacatgatgagag 135  Q
    || ||||||||||||    
T  3461369 ttcacatgatgagag 3461355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 18641420 - 18641517
Alignment:
Q  21 tcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactca 118  Q
    ||||||| |||||||| |||||||||||||| |||||||||||  ||||||||| ||| || |||||||| ||||||||||| |||| ||||||||||    
T  18641420 tcagtgtcagaggctttatcacttcacacttgagctctttcatcactgaatccagccataatgcttgacaagtagcaaatgttcctgtaatgtactca 18641517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 34983029 - 34982935
Alignment:
Q  24 gtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactca 118  Q
    ||||||||||||||| |||||||||||| ||||||||||| ||| | |||||||| ||| ||||||| ||||||||||| | |||||| ||||||    
T  34983029 gtgttagaggcttcaccacttcacacttgagctctttcatcgctaattccaaccataaaacttgacaagtagcaaatgttcatgcaatatactca 34982935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 296757 - 296659
Alignment:
Q  21 tcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactcag 119  Q
    ||||||| ||||||||||||||||||||||| |||||||| ||  ||||||||| ||| |  |||||| | ||||||||||| ||||||||||||||||    
T  296757 tcagtgtcagaggcttcatcacttcacacttgagctcttttatcactgaatccagccatagtgcttgaaaagtagcaaatgttcctgcaatgtactcag 296659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 30380335 - 30380226
Alignment:
Q  22 cagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactcagat 121  Q
    |||||||||||| ||||||||||||||||| |||||||||||  |||||||||| || | ||||||||| |||||||| || ||| ||||||| |||  |    
T  30380335 cagtgttagaggtttcatcacttcacacttgagctctttcatcactgaatccaatcatagagcttgacaagtagcaaaagttccttcaatgtattcaact 30380236  T
Q  122 ttacatgatg 131  Q
    | ||||||||    
T  30380235 tcacatgatg 30380226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 135
Target Start/End: Original strand, 29011197 - 29011291
Alignment:
Q  41 acttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactcagatttacatgatgagag 135  Q
    ||||||||||| || || |||||  ||||||||||||||||||||||||||||||||||| | |||||||| ||||||| || ||| ||||||||    
T  29011197 acttcacacttgagttcattcatcactgaatccaaccacaaagcttgacatgtagcaaatattcctgcaatatactcagcttcacaagatgagag 29011291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 28248844 - 28248748
Alignment:
Q  21 tcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactc 117  Q
    ||||||| |||||||| | |||||||||||| |||||||||||  || |||||| ||| || | ||| || |||||||| || || || ||||||||    
T  28248844 tcagtgtcagaggctttaccacttcacacttgagctctttcatcactaaatccagccataatgtttggcaagtagcaaaagttccagctatgtactc 28248748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 14233803 - 14233709
Alignment:
Q  17 attctcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaat 111  Q
    ||||| || |||||||||||||  |||||||| |||||||| |||||  ||||||| ||||||| ||||||||| ||||||||||| | ||||||    
T  14233803 attctgagggttagaggcttcactacttcacatttaagctccttcatcactgaatctaaccacatagcttgacaagtagcaaatgttcttgcaat 14233709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 49006 - 48910
Alignment:
Q  21 tcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactc 117  Q
    ||||||| |||||||| | |||||||||||| |||||||||||  || |||||| ||| || | ||| || |||||||| || || || ||||||||    
T  49006 tcagtgtcagaggctttaccacttcacacttgagctctttcatcactaaatccagccataatgtttggcaagtagcaaaagttccagctatgtactc 48910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 44536443 - 44536499
Alignment:
Q  83 gcttgacatgtagcaaatgtacctgcaatgtactcagatttacatgatgagagcgca 139  Q
    |||||||| |||||||||||  ||||||||||||| | |||||  ||||||||||||    
T  44536443 gcttgacaagtagcaaatgtttctgcaatgtactctggtttactggatgagagcgca 44536499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University