View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13987_low_2 (Length: 545)
Name: NF13987_low_2
Description: NF13987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13987_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 246 - 531
Target Start/End: Complemental strand, 38623584 - 38623300
Alignment:
| Q |
246 |
tccatttgcaagtaggagaaaacatccacatttgataatagaacactaggtctgttttgtttcgcgtttggatacatacggcactgaaaacacgataaaa |
345 |
Q |
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| T |
38623584 |
tccatttgcaagtaggagaaaacatccacatttgataatagaacaccaggtctgttttgtttcgcgtttggatacatacggcactgaaa-cacgataaaa |
38623486 |
T |
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| Q |
346 |
ctttagttcttctacaagggactaggaacagagtattattacatcatagtagtactgtactacacaactgaagattatggtgcagcacttgagaatcaaa |
445 |
Q |
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| T |
38623485 |
ctttagttcttctacaagggactaggaacagggtattattacatcatagtagtactgtactacacaactgaagattatggtgcagcacttgagaatcaaa |
38623386 |
T |
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| Q |
446 |
cgaacattgttaggatcagcttcctctactgctcactcttcaggtcatcttctatcatataagtataactcatttcattcttcttg |
531 |
Q |
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| T |
38623385 |
cgaacattgttaggatcagcttcctctactgctcactcttcaggtcatcttctatcatataagtataactcatttcattcttcttg |
38623300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 38623812 - 38623630
Alignment:
| Q |
18 |
gatatatggtgagtggtcgttgttgactatgacagtttgactgcaaatttgggatcaatttttcttaccctatcataaataatttgttccgtttctctct |
117 |
Q |
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| T |
38623812 |
gatatatggtgagtggtcgttgttgactatgacagtttgactgcaaatttgggatcaatttttcttaccctatcataaataatttgttccctttctctct |
38623713 |
T |
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| Q |
118 |
tgagacggttacacccacccacagttcatatgtttatgttttcgtcacataaataatttattttacatttaacttccgtcaag |
200 |
Q |
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| T |
38623712 |
tgagacggttacacccacccacagttcatatgtttatgttttcgtcacataaataatttattttacatttaacttccgtcaag |
38623630 |
T |
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