View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13987_low_5 (Length: 483)

Name: NF13987_low_5
Description: NF13987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13987_low_5
NF13987_low_5
[»] chr5 (14 HSPs)
chr5 (16-464)||(8528450-8528917)
chr5 (16-269)||(9074855-9075109)
chr5 (16-155)||(8535333-8535472)
chr5 (38-155)||(1600437-1600554)
chr5 (163-272)||(8535183-8535294)
chr5 (64-155)||(8677637-8677728)
chr5 (63-155)||(8548273-8548365)
chr5 (362-464)||(8535017-8535122)
chr5 (64-155)||(8644044-8644135)
chr5 (64-153)||(8636701-8636790)
chr5 (163-316)||(8548409-8548562)
chr5 (64-119)||(8641242-8641297)
chr5 (64-152)||(9003305-9003393)
chr5 (167-236)||(1600601-1600670)
[»] chr4 (1 HSPs)
chr4 (16-464)||(9442600-9443078)
[»] scaffold0627 (1 HSPs)
scaffold0627 (60-155)||(4492-4587)
[»] chr1 (1 HSPs)
chr1 (26-155)||(5130638-5130767)
[»] chr7 (2 HSPs)
chr7 (16-130)||(35779694-35779808)
chr7 (62-155)||(48362030-48362128)
[»] chr6 (1 HSPs)
chr6 (62-155)||(16716179-16716272)


Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 16 - 464
Target Start/End: Complemental strand, 8528917 - 8528450
Alignment:
Q  16 aatatgggttcaaagtttttcgaattcatgggagtcggataaattattttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528917 aatatgggttcaaagtttttcgaattcatgggagtcggataaattattttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaa 8528818  T
Q  116 aggagtcaatattgaggttctgaatatccactcaaggtaaaatttta----------------aatctgatggttgatgcttccttacaagtcatagtaa 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||    
T  8528817 aggagtcaatattgaggttctgaatatccactcaaggtaaaattttatttttattggcaattgaatctgatggttgatgcttccttacaagtcatagtaa 8528718  T
Q  200 ttgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttacacttatattttaaacttactatttttccattccatttggagaa 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528717 ttgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttacacttatattttaaacttactatttttccattccatttggagaa 8528618  T
Q  300 aagaagacatgttgttaggttacttaggtagatatattctcacaacgacatgttggagaaaggttgtcatgtttcgtcaatcatttgctttcacagctaa 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528617 aagaagacatgttgttaggttacttaggtagatatattctcacaacgacatgttggagaaaggttgtcatgtttcgtcaatcatttgctttcacagctaa 8528518  T
Q  400 tatatttatga---tgtatatatttgttataattttagttcttttctgttgtctaatatataccacct 464  Q
    |||||||||||   ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8528517 tatatttatgatgttgtatatatttgttatatttttagttcttttctgttgtctaatatataccacct 8528450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 9074855 - 9075109
Alignment:
Q  16 aatatgggttcaaagtttttcgaattcatgggagtcggataaattattttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaa 115  Q
    ||||||| ||||||||||||||||||||||||||||    ||| | |||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  9074855 aatatggattcaaagtttttcgaattcatgggagtcattcaaagttttttgaagtaatcccacatattccaagtctaatttcattgaaggatgtcttgaa 9074954  T
Q  116 aggagtcaatattgaggttctgaatatccactcaaggtaa-aattttaaatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatg 214  Q
    ||||| |||||| ||||| ||||||||||||||||||||| ||| |    ||| ||  || ||  |||| ||||||||||||||||| ||| |||||||     
T  9074955 aggagacaatatcgaggtgctgaatatccactcaaggtaagaatgtagcttctaatactttat-tttccgtacaagtcatagtaattaattttaatcata 9075053  T
Q  215 agtcgagtattcaaagggacttgtgtaagtttcctatgtta-cacttatattttaa 269  Q
    ||  |||| |||||||||||| | || |||||| ||||||| ||||||||||||||    
T  9075054 agatgagttttcaaagggactcgagtgagtttcttatgttaccacttatattttaa 9075109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 8535472 - 8535333
Alignment:
Q  16 aatatgggttcaaagtttttcgaattcatgggagtcggataaattattttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaa 115  Q
    ||||||| ||| |||||||||||||| | |||||| |   ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8535472 aatatggattcgaagtttttcgaatttacgggagtagttcaaatttttttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaa 8535373  T
Q  116 aggagtcaatattgaggttctgaatatccactcaaggtaa 155  Q
    ||| | ||||||||||||||||||||||||||||||||||    
T  8535372 aggtgacaatattgaggttctgaatatccactcaaggtaa 8535333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 1600437 - 1600554
Alignment:
Q  38 aattcatgggagtcggataaattattttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctg 137  Q
    |||||||||||||||   | ||| ||||||| ||||||| || ||||||||||||||||||||||||||||| |||||||| | |||||||||||| |||    
T  1600437 aattcatgggagtcgttcagattgttttgaaataatcccgcatattccaagtctaatttcattgaaggatgtcttgaaaggggacaatattgaggtgctg 1600536  T
Q  138 aatatccactcaaggtaa 155  Q
    ||||||||||||||||||    
T  1600537 aatatccactcaaggtaa 1600554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 163 - 272
Target Start/End: Complemental strand, 8535294 - 8535183
Alignment:
Q  163 aatctgatggttgatgcttccttacaa-gtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgtta-cactt 260  Q
    |||||||||||||||||| |||||||| |||||||||||||||| ||||||| || |||||||||||||| |||| |||||||||||||||||| || ||    
T  8535294 aatctgatggttgatgctcccttacaaagtcatagtaattgattttaatcataagacgagtattcaaaggaacttctgtaagtttcctatgttaccagtt 8535195  T
Q  261 atattttaaact 272  Q
    ||||||||||||    
T  8535194 atattttaaact 8535183  T

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Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 64 - 155
Target Start/End: Complemental strand, 8677728 - 8677637
Alignment:
Q  64 ttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 155  Q
    ||||| |||| |||||  ||||||||||||| ||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||    
T  8677728 ttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtaa 8677637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 63 - 155
Target Start/End: Original strand, 8548273 - 8548365
Alignment:
Q  63 tttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 155  Q
    ||||||||||| | ||| |||||||||||||| ||||||||||||||  ||||||||| |||||||||||| |||||||||||||||| ||||    
T  8548273 tttgaagtaattcaacatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagtaa 8548365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 362 - 464
Target Start/End: Complemental strand, 8535122 - 8535017
Alignment:
Q  362 gttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatga---tgtatatatttgttataattttagttcttttctgttgtctaatatata 458  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||||||||   ||| |||||||||||||| ||||||| |||||  || |||||||||||    
T  8535122 gttgtgatgtttcgtcaatcatttgcttttacaactaatatatttatgaagttgtttatatttgttataaatttagttattttccattatctaatatata 8535023  T
Q  459 ccacct 464  Q
    ||||||    
T  8535022 ccacct 8535017  T

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Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 64 - 155
Target Start/End: Complemental strand, 8644135 - 8644044
Alignment:
Q  64 ttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 155  Q
    ||||| |||| |||||  ||||||||||||| ||||||||||||||| ||||||||| ||||| |||| | |||||||||||||||||||||    
T  8644135 ttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatactgagatgctgaatatccactcaaggtaa 8644044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 8636790 - 8636701
Alignment:
Q  64 ttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggt 153  Q
    ||||| |||| |||||  ||||||||||||| ||||||||||||||  ||||||||| |||||| ||||| |||||||||||||||||||    
T  8636790 ttgaaataattccacatgttccaagtctaatctcattgaaggatgtcgtgaaaggagacaatatcgaggtgctgaatatccactcaaggt 8636701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 163 - 316
Target Start/End: Original strand, 8548409 - 8548562
Alignment:
Q  163 aatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttac-actta 261  Q
    |||||||||||||||||| || || || ||||||||||| ||| ||||||| ||  |||||||||||||| | ||||| | |||  | ||||||  ||||    
T  8548409 aatctgatggttgatgctcccataaaaatcatagtaattaattttaatcataagatgagtattcaaagggtcatgtgtgaattttttgtgttactgctta 8548508  T
Q  262 tattttaaacttactatttttccattccatttggagaaaagaagacatgttgtta 316  Q
    || ||||||||| |||||||  ||||| ||||||| ||| |||| | ||||||||    
T  8548509 ta-tttaaacttcctattttggcattctatttggataaaggaaggcttgttgtta 8548562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 8641297 - 8641242
Alignment:
Q  64 ttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaagga 119  Q
    |||||||||| ||||| |||||||||||||| ||||||||||||||  ||||||||    
T  8641297 ttgaagtaattccacatattccaagtctaatctcattgaaggatgtcgtgaaagga 8641242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 152
Target Start/End: Complemental strand, 9003393 - 9003305
Alignment:
Q  64 ttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaagg 152  Q
    |||||||||| ||||| |||||||||||||| ||||||||||| | | | || |||| |||| |||||||  ||||| || ||||||||    
T  9003393 ttgaagtaattccacatattccaagtctaatctcattgaaggaggctgtaaatggagacaatgttgaggtgttgaatgtctactcaagg 9003305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 1600601 - 1600670
Alignment:
Q  167 tgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggactt 236  Q
    ||||||| |||| | || ||||||||||||||||| ||| ||||||| || | ||| |||||||||||||    
T  1600601 tgatggtcgatgttcccatacaagtcatagtaattaattttaatcataagacaagttttcaaagggactt 1600670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 464
Target Start/End: Complemental strand, 9443078 - 9442600
Alignment:
Q  16 aatatgggttcaaagtttttcgaattcatgggagtcggataaattattttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaa 115  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9443078 aatatgggttcaaagtttttcgaattcatgggagtcggaaaaattattttgaagtaatccaacacattccaagtctaatttcattgaaggatgttttgaa 9442979  T
Q  116 aggagtcaatattgaggttctgaatatccactcaaggtaaaatttta----------------aatctgatggttgatgcttccttacaagtcatagtaa 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||| ||||||||||||||||    
T  9442978 aggagtcaatattgaggttctgaatatccactcaaggtaaaattttatttttattggcaattgaatctgatggttgatgcttctttacaagtcatagtaa 9442879  T
Q  200 ttgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttacacttatattttaaacttactatttttccattccatttggagaa 299  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9442878 ttgattgtaatcatgagatgagtattcaaagggacttgtgtaagtttcctatgttacacttatattttaaacttactattttgccattccatttggagaa 9442779  T
Q  300 aagaagacatgttgttaggttacttaggtagatatattctcacaacgacatgttg-----------gagaaaggttgtcatgtttcgtcaatcatttgct 388  Q
    ||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||           |||||||||||| |||||||||||||||||||||    
T  9442778 aagaaaacatgttgttaggttacttcggttgatatattctcacaacgacatgttggagacatgttggagaaaggttgtgatgtttcgtcaatcatttgct 9442679  T
Q  389 ttcacagctaatatatttatga---tgtatatatttgttataattttagttcttttctgttgtctaatatataccacct 464  Q
    ||| ||||||||||||||||||   ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9442678 ttcgcagctaatatatttatgatgttgtatatatttgttatatttttagttcttttctgttgtctaatatataccacct 9442600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 4587 - 4492
Alignment:
Q  60 tattttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 155  Q
    |||||||||||||| ||||| |||||||||||||| |||||||||||||   ||||||||| ||||||||||||  ||||||||||||||||||||    
T  4587 tattttgaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagacaatattgaggtgttgaatatccactcaaggtaa 4492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 26 - 155
Target Start/End: Complemental strand, 5130767 - 5130638
Alignment:
Q  26 caaagtttttcgaattcatgggagtcggataaattattttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaat 125  Q
    ||||||||||||||||||||||| | |   |||  |  |||||||||| ||||| ||| |||||||||||||| | |||||| || ||||||||| ||||    
T  5130767 caaagtttttcgaattcatgggacttgttcaaaaaagattgaagtaattccacatatttcaagtctaatttcactaaaggatattgtgaaaggagacaat 5130668  T
Q  126 attgaggttctgaatatccactcaaggtaa 155  Q
    |||||||| |||||||| ||||||||||||    
T  5130667 attgaggtgctgaatattcactcaaggtaa 5130638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 35779808 - 35779694
Alignment:
Q  16 aatatgggttcaaagtttttcgaattcatgggagtcggataaattattttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaa 115  Q
    ||||||| | ||||||||||||||||| ||||| |||   ||| | | |||||||||| ||||| |||||||||||||| ||||||||||||||| | ||    
T  35779808 aatatggatacaaagtttttcgaattcgtgggactcgttcaaaatctgttgaagtaattccacatattccaagtctaatatcattgaaggatgttgtaaa 35779709  T
Q  116 aggagtcaatattga 130  Q
    ||||| |||||||||    
T  35779708 aggagacaatattga 35779694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 155
Target Start/End: Original strand, 48362030 - 48362128
Alignment:
Q  62 ttttgaagtaatcccacacattccaagtctaat-----ttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 155  Q
    |||||||||||||||||| ||||||||||||||     ||||||||||||||| ||||||||||  ||||| |||||  ||||| ||||||||||||||    
T  48362030 ttttgaagtaatcccacatattccaagtctaatttaatttcattgaaggatgtcttgaaaggagataatatggaggtgttgaatgtccactcaaggtaa 48362128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 62 - 155
Target Start/End: Complemental strand, 16716272 - 16716179
Alignment:
Q  62 ttttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 155  Q
    |||| ||||||| ||||| |||||||||||||| |||||||||||||   |||||||||  |||||||||||  ||||||||||||||||||||    
T  16716272 ttttaaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagagaatattgaggtgttgaatatccactcaaggtaa 16716179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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