View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13987_low_8 (Length: 370)
Name: NF13987_low_8
Description: NF13987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13987_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 40960458 - 40960267
Alignment:
| Q |
1 |
agcataaatcagtaattaagaagacgcatgtacatcatgcttttcttttagaatacatgtcatgttttattttattttattcatgtatataagttgcatg |
100 |
Q |
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| T |
40960458 |
agcataaatcagtaattaagaagacgcatgtacatcatgcttttcttttagaatacatgtcatgttttattttattttattcatgtatataagttgcatg |
40960359 |
T |
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| Q |
101 |
cgcccagcccaaatttttgcatcaagcctttggagaagcaggaggaggattataacctgaaagagtcacagttatactaaacatgattagca |
192 |
Q |
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| T |
40960358 |
cgcccagcccaaatttttgcatcaagcctttggagaagtaggaggaggattataacctgaaagagtcacagttatactaaacatgattagca |
40960267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 198 - 354
Target Start/End: Complemental strand, 40960196 - 40960039
Alignment:
| Q |
198 |
agtttataatattattcaataaccaactgattagtgtgtgtataatttactctgttaagctctttaaaaa-attaacttacttccacatttgcctgtagg |
296 |
Q |
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| T |
40960196 |
agtttataatattattcaataaccaactgattagtgtgtgtataatttactctattaagctctttaaaaatattaacttacttccacatttgcctgtagg |
40960097 |
T |
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| Q |
297 |
aatatcttgcaattcgcaatttcgagctacattcaaagctttgtcaatgctgatattt |
354 |
Q |
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| T |
40960096 |
aatatcttgcaattcgcaatttcgagctacattcaaagctttgtcaatgctgatattt |
40960039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 40953798 - 40953722
Alignment:
| Q |
70 |
ttttattttattcatgtatataagttgcatgcgcccagcccaaatttttgcatcaagcctttggagaagcaggaggagga |
149 |
Q |
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| T |
40953798 |
ttttattttattcatatatataagttccatgcgcc---cccaattttttgcatcaagcctttagagaaggaggatgagga |
40953722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 40954279 - 40954224
Alignment:
| Q |
114 |
tttttgcatcaagcctttggagaagcaggaggaggattataacctgaaagagtcac |
169 |
Q |
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| T |
40954279 |
tttttgcataaagtcttcggagaagcaggaggaggattataacctgaaagaatcac |
40954224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 353
Target Start/End: Complemental strand, 40953661 - 40953557
Alignment:
| Q |
252 |
ttaagctctttaaaaa--att-aacttacttccacatttgcctgtaggaatatcttg-caattcgcaatttcgagctacattcaaagctttgtcaatgct |
347 |
Q |
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| T |
40953661 |
ttaagctctttaaaaataattgaacttacttccacacttgtccgtaggaatatcttggcaatt-gcaatatccagcgatattcaaagctttttcaatgct |
40953563 |
T |
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| Q |
348 |
gatatt |
353 |
Q |
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|||||| |
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| T |
40953562 |
gatatt |
40953557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 40945506 - 40945426
Alignment:
| Q |
270 |
taacttacttccacatttgcctgtaggaatatcttgcaattcgcaatttcgagctacattcaaagctttgtcaatgctgat |
350 |
Q |
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||||||||||||||| ||| |||||||||||| |||||||| |||| || ||||| | |||||||||||| |||||||| |
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| T |
40945506 |
taacttacttccacacttgtctgtaggaatattttgcaattggcaagttttggctacgtacaaagctttgtctatgctgat |
40945426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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