View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13987_low_9 (Length: 342)
Name: NF13987_low_9
Description: NF13987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13987_low_9 |
 | |
|
| [»] scaffold0014 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 6623203 - 6622902
Alignment:
| Q |
1 |
gagatacaaaaatatgtaaccactg-aaaagatttactaatttatgcatcaaaactttaagaaaactggaaatcatccgaaggaatacgattttataaac |
99 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||| ||| | |||||||||||||||||| |
|
|
| T |
6623203 |
gagatacaaaaatatgtaaccactgcaaaagatttactaatttatgtatcaaaacttcaagaaaactggaaattatcaatatgaatacgattttataaac |
6623104 |
T |
|
| Q |
100 |
tcgtgttgtgcattgctgaatgaagaacatcaacagcattgaaatccaagagaagacagcagtattgaaatccaagtgctgaaaatgatgatttcaggtt |
199 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| ||||||||||||| |
|
|
| T |
6623103 |
tcgtgttgtgcgttgctgaatgaagaacttcaacagcattgaaatccaagagaagacaacagtattgatattcaagtgctgaaaattatgatttcaggtt |
6623004 |
T |
|
| Q |
200 |
cacaagctatcaagcaaccaagtttcacgcgtgaaaatacggtttgg-aatgtctaacatttggagaagttgccacagtactacgctacttctgtgatgt |
298 |
Q |
| |
|
|| ||||| ||||||||||||||| | || |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6623003 |
cagaagctttcaagcaaccaagttctaagcttgaaaatacggtttggaaatgtctaacatttggagaagttgctgtagtactacgctacttctgtgatgt |
6622904 |
T |
|
| Q |
299 |
tt |
300 |
Q |
| |
|
|| |
|
|
| T |
6622903 |
tt |
6622902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 90416 - 90628
Alignment:
| Q |
1 |
gagatacaaaaatatgtaaccactgaaaagatttactaatttatgcatcaaaactttaagaaaactggaaatcatccgaaggaatacgattttataaact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
90416 |
gagatacaaaaatatgtaaccactgaaaagatttactaatttatgtatcaaaactt----aaaactggaaatcatccgaaggaatatgattttataaact |
90511 |
T |
|
| Q |
101 |
cgtgttgtgcattgctgaatgaagaacatcaacagcattgaaatccaagagaagacagcagtattgaaatccaagtgctgaaaatgatgatttcaggttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
90512 |
cgtgttgtgcattgctgaatgaagaacatcaacagcattgaaatccaagagaagacggcagtattgaaatccaagtgctgaaaacgatgatttcaggttc |
90611 |
T |
|
| Q |
201 |
acaagctatcaagcaac |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
90612 |
acaagctatcaagcaac |
90628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 261 - 307
Target Start/End: Original strand, 90629 - 90675
Alignment:
| Q |
261 |
ggagaagttgccacagtactacgctacttctgtgatgtttcacagtc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
90629 |
ggagaagttgccacagtactacgctacttctgtgatgtttcacagtc |
90675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 13747516 - 13747467
Alignment:
| Q |
174 |
agtgctgaaaatgatgatttcaggttcacaagctatcaagcaaccaagtt |
223 |
Q |
| |
|
||||||||| ||||||| || ||||||||||||||||||||| ||||||| |
|
|
| T |
13747516 |
agtgctgaagatgatgactttaggttcacaagctatcaagcagccaagtt |
13747467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University