View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13988_high_2 (Length: 609)

Name: NF13988_high_2
Description: NF13988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13988_high_2
NF13988_high_2
[»] chr8 (23 HSPs)
chr8 (19-592)||(6353125-6353698)
chr8 (406-592)||(6290420-6290606)
chr8 (16-286)||(6363918-6364188)
chr8 (19-257)||(7460023-7460261)
chr8 (404-592)||(6425200-6425388)
chr8 (19-220)||(7471601-7471800)
chr8 (490-592)||(6364469-6364571)
chr8 (374-592)||(7460552-7460770)
chr8 (492-592)||(6392094-6392194)
chr8 (110-254)||(6424890-6425034)
chr8 (492-583)||(6411258-6411349)
chr8 (490-592)||(6371300-6371402)
chr8 (483-592)||(6333173-6333282)
chr8 (67-222)||(6332781-6332936)
chr8 (64-220)||(6275327-6275483)
chr8 (483-592)||(6275745-6275854)
chr8 (483-592)||(6322606-6322715)
chr8 (94-222)||(6322224-6322352)
chr8 (490-592)||(6264927-6265029)
chr8 (236-337)||(6370995-6371097)
chr8 (493-583)||(6458262-6458352)
chr8 (498-583)||(6452174-6452259)
chr8 (142-222)||(6289828-6289908)
[»] chr2 (1 HSPs)
chr2 (496-583)||(42694394-42694481)
[»] chr3 (1 HSPs)
chr3 (493-592)||(36743922-36744021)
[»] chr5 (1 HSPs)
chr5 (498-592)||(9603074-9603168)


Alignment Details
Target: chr8 (Bit Score: 505; Significance: 0; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 19 - 592
Target Start/End: Original strand, 6353125 - 6353698
Alignment:
Q  19 cttagtacatcagtaggaagcttaattccaccctcgtagagagagcgcacatcttgaaaggtgttgaactccgggttattgagttgtaacgtaactacag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||    
T  6353125 cttagtacatcagtaggaagcttaattccaccctcgtagagagagcgcacatcttgaaaggtgttaaactcagggttattgagttgtaatgtaactacag 6353224  T
Q  119 atctcaattgaggtatgacattctgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaatgattcatctcttggaaggta 218  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6353225 atctcagttgaggtatgacattttgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaaagattcatctcttggaaggta 6353324  T
Q  219 aacagtgggacttcgagtctcactcttaggatctgttcaaatatataataacaatatatgttttagaaacaataccaaaatctttagaatcataagcagg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6353325 aacagtgggacttcgagtctcactcttaggatctgttcaaatatataataacaatatatgttttagaaacaataccaaaatctttagaatcataagcagg 6353424  T
Q  319 gtaaacatttggatcaaccnnnnnnncacatgtttagtccaaaatatgacacaagtgtttgtagcctaacctgttttagtttttcttctgccggttcttc 418  Q
    |||||||||||||||||||       ||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||| |||||||    
T  6353425 gtaaacatttggatcaaccaaaaaaacacatgtttagtccaaaatctgacagaagtgtttgtggcctaacctgttttagtttttcttctgccagttcttc 6353524  T
Q  419 cccttcgagggtaagggaaatcgctcgatcccccaagaatttgacgcgccaattgaggtttcgagtcaggctcacccaaatcattgtagacatcgtaatc 518  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6353525 cccttcgagggtaagggaaatcgcttgatcccccaagaatttgacgcgccaattgaggtttcgagtcaggctcacccaaatcattgtagacatcgtaatc 6353624  T
Q  519 atatattctatcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttcttgtctgtagt 592  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6353625 atatattctttcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttcttgtctgtagt 6353698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 406 - 592
Target Start/End: Original strand, 6290420 - 6290606
Alignment:
Q  406 ctgccggttcttccccttcgagggtaagggaaatcgctcgatcccccaagaatttgacgcgccaattgaggtttcgagtcaggctcacccaaatcattgt 505  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6290420 ctgccggttcttccccttcgagggtaagggaaattgctcgatcccccaagaatttgacgcgccaattgaggtttcgagtcaggctcacctaaatcattgt 6290519  T
Q  506 agacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttcttgtctgtagt 592  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  6290520 agacatcgtaatcatatattctttcccattccttgcgctctcctgttccatctcctcttaaagtcttcaattcttcttgtctatagt 6290606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 6363918 - 6364188
Alignment:
Q  16 tcacttagtacatcagtaggaagcttaattccaccctcgtagagagagcgcacatcttgaaaggtgttgaactccgggttattgagttgtaacgtaacta 115  Q
    |||||||||| ||||||||||||| | |||||||| || ||||| ||||||||||||| ||||||||| ||||| || | || || |||||| |||||||    
T  6363918 tcacttagtatatcagtaggaagcctgattccaccttcatagagcgagcgcacatcttcaaaggtgttaaactcaggctcatggaattgtaatgtaacta 6364017  T
Q  116 cagatctcaattgaggtatgacattctgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaatgattcatctcttggaag 215  Q
     |||||| ||| ||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6364018 tagatcttaatcgaggtatgacattttgagatgcagatttgagtatgtgaacaagaaagtctgatgactttgtgtgtccaaatgattcatctcttgggag 6364117  T
Q  216 gtaaacagtgggacttcgagtctcactcttaggatctgttcaaatatataataacaatatatgttttagaa 286  Q
    ||||||||||  ||||||| |||||||||||||||||||||| | ||| ||||||||| ||||||||||||    
T  6364118 gtaaacagtgtcacttcgactctcactcttaggatctgttcacaaatacaataacaatgtatgttttagaa 6364188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 7460023 - 7460261
Alignment:
Q  19 cttagtacatcagtaggaagcttaattccaccctcgtagagagagcgcacatcttgaaaggtgttgaactccgggttattgagttgtaacgtaactacag 118  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| | ||||| ||||||||| ||||| ||||||||||||||||| ||| ||  ||    
T  7460023 cttagtacatcagtaggaagcttaattccaccatcgtagagagagcgtatatcttcaaaggtgttaaactcagggttattgagttgtaatgtagctttag 7460122  T
Q  119 atctcaattgaggtatgacattctgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaatgattcatctcttggaaggta 218  Q
    ||||||| | |||||||||  | |||| ||||||||||||||  ||| |||||||||| ||||||||   ||| |||||||||||||||||||||| |||    
T  7460123 atctcaaattaggtatgactctgtgagttgctgatttgagtacataaccaagaaagtcagatgacttcaagtgaccaaatgattcatctcttggaacgta 7460222  T
Q  219 aacagtgggacttcgagtctcactcttaggatctgttca 257  Q
    || || |  ||||||| ||||||||||||||||||||||    
T  7460223 aatagcgtcacttcgactctcactcttaggatctgttca 7460261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 404 - 592
Target Start/End: Original strand, 6425200 - 6425388
Alignment:
Q  404 ttctgccggttcttccccttcgagggtaagggaaatcgctcgatcccccaagaatttgacgcgccaattgaggtttcgagtcaggctcacccaaatcatt 503  Q
    ||||||| ||||| ||||||||||||||||| ||   ||||||||| ||||||| | ||||  ||||   ||||||||||||||||||||||||||||||    
T  6425200 ttctgcctgttctcccccttcgagggtaaggcaaggtgctcgatcctccaagaactggacgacccaaggtaggtttcgagtcaggctcacccaaatcatt 6425299  T
Q  504 gtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttcttgtctgtagt 592  Q
    |||||||||||||||||| || || ||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||| ||||    
T  6425300 gtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttcttgtctatagt 6425388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 7471601 - 7471800
Alignment:
Q  19 cttagtacatcagtaggaagcttaattccaccctcgtagagagagcgcacatcttgaaaggtgttgaactccgggttattgagttgtaacgtaactacag 118  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||   ||||| ||||||||| ||||| ||||||||||||||||| ||||||  ||    
T  7471601 cttagtacatcagtaggaagcttaattccaccatcgtagagagatcgtgtatcttcaaaggtgttaaactcggggttattgagttgtaatgtaactttag 7471700  T
Q  119 atctcaattgaggtatgacattctgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaatgattcatctcttggaaggta 218  Q
    ||||||| | ||| |||||  |||||| ||||||||||||||  ||| |||||||||| ||||||||   ||| |||||||||||||||||||||| |||    
T  7471701 atctcaaattaggcatgac--tctgagttgctgatttgagtacataaccaagaaagtcagatgacttcaagtgaccaaatgattcatctcttggaacgta 7471798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 490 - 592
Target Start/End: Original strand, 6364469 - 6364571
Alignment:
Q  490 tcacccaaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttcttgtctgt 589  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6364469 tcacccaaatcattgtagacatcataatcatatattctttcccattccttacgctctccagttccatctcctcttaaagtcttcaattcttcttgtctgt 6364568  T
Q  590 agt 592  Q
    |||    
T  6364569 agt 6364571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 374 - 592
Target Start/End: Original strand, 7460552 - 7460770
Alignment:
Q  374 tgtttgtagcctaacctgttttagtttttcttctgccggttcttccccttcgagggtaagggaaatcgctcgatcccccaagaatttgacgcgccaattg 473  Q
    |||||| |||||||||| |||||| |  | ||||||||||||||||||||||||||||||| || |  |  | ||| |||  ||   |||| |||||       
T  7460552 tgtttggagcctaaccttttttagatggttttctgccggttcttccccttcgagggtaaggcaagtttccaggtcctccagcaacaggacgagccaagct 7460651  T
Q  474 aggtttcgagtcaggctcacccaaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctcttaaagtcttc 573  Q
    || ||||  ||| || |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  7460652 agctttctggtcgggatcacccaagtcattgtagacatcataatcatatattctgtcccattccttgcgctctcccgttccatctcctcttaaagtcttc 7460751  T
Q  574 aattcttcttgtctgtagt 592  Q
    |||||||||||||||||||    
T  7460752 aattcttcttgtctgtagt 7460770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 492 - 592
Target Start/End: Original strand, 6392094 - 6392194
Alignment:
Q  492 acccaaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttcttgtctgtag 591  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6392094 acccaaatcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttcttgtctgtag 6392193  T
Q  592 t 592  Q
    |    
T  6392194 t 6392194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 110 - 254
Target Start/End: Original strand, 6424890 - 6425034
Alignment:
Q  110 taactacagatctcaattgaggtatgacattctgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaatgattcatctct 209  Q
    ||||||||||| ||||   |||||||| ||| ||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||  ||||||||    
T  6424890 taactacagatttcaaggaaggtatgatattttgagatgctgatttgagtatgaaagcaagaaagtctgaagactttgtgtgtccaaatgcctcatctct 6424989  T
Q  210 tggaaggtaaacagtgggacttcgagtctcactcttaggatctgt 254  Q
    ||||||||||||||||   || ||| |||||||||||||||||||    
T  6424990 tggaaggtaaacagtgccgctccgactctcactcttaggatctgt 6425034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 492 - 583
Target Start/End: Original strand, 6411258 - 6411349
Alignment:
Q  492 acccaaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttctt 583  Q
    ||||||||||||||||||||| |||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  6411258 acccaaatcattgtagacatcataatcatatattctgtcccataccttacgctctccagttccatctcctcttaaagtcttcaattcttctt 6411349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 490 - 592
Target Start/End: Original strand, 6371300 - 6371402
Alignment:
Q  490 tcacccaaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttcttgtctgt 589  Q
    |||||||||||||||||||||||||| ||||| || ||||||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||||    
T  6371300 tcacccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttccatctcctcttaaagtcttcaactcttcttgtctgt 6371399  T
Q  590 agt 592  Q
    |||    
T  6371400 agt 6371402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 483 - 592
Target Start/End: Original strand, 6333173 - 6333282
Alignment:
Q  483 gtcaggctcacccaaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttct 582  Q
    |||||| |||||||| |||||||| |||||||| ||||| || |||||| |||| |||||||| || |||||||||||||||||||||||||||||||||    
T  6333173 gtcaggatcacccaagtcattgtaaacatcgtagtcatagatcctatccgattctttgcgctcacccgttccatctcctcttaaagtcttcaattcttct 6333272  T
Q  583 tgtctgtagt 592  Q
    ||||||||||    
T  6333273 tgtctgtagt 6333282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 67 - 222
Target Start/End: Original strand, 6332781 - 6332936
Alignment:
Q  67 acatcttgaaaggtgttgaactccgggttattgagttgtaacgtaactacagatctcaattgaggtatgacattctgagatgctgatttgagtatgtaaa 166  Q
    ||||||| ||| ||||| ||||| || | ||||| |||||| |||| | ||||||  ||||||||||| ||||| |||||||||||||| ||||| ||||    
T  6332781 acatcttcaaaagtgttaaactctggctgattgaattgtaatgtaagtgcagatcgtaattgaggtataacattttgagatgctgatttcagtatataaa 6332880  T
Q  167 caagaaagtctgatgactttgtgtgtccaaatgattcatctcttggaaggtaaaca 222  Q
    ||||||||||||| |||||   ||| |||||||||||||||||||||| |||||||    
T  6332881 caagaaagtctgaagacttcaagtggccaaatgattcatctcttggaatgtaaaca 6332936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 6275327 - 6275483
Alignment:
Q  64 cgcacatcttgaaaggtgttgaactccgggttattgagttgtaacgtaactacagatctcaattgaggtatgacattctgagatgctgatttgagtatgt 163  Q
    |||||||| | |||| |||| || || || ||||||| |||||| |||| | |||||   ||||||||||||||||| |||||| |||||||||||||||    
T  6275327 cgcacatcatcaaagctgttaaattctggcttattgaattgtaatgtaattgcagattgtaattgaggtatgacattttgagatactgatttgagtatgt 6275426  T
Q  164 aaacaagaaagtctgatgactttgtgtgtccaaatgattcatctcttggaaggtaaa 220  Q
    |||||||||| ||||| |||||   ||| ||||||||||||||||||||||| ||||    
T  6275427 aaacaagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaa 6275483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 483 - 592
Target Start/End: Original strand, 6275745 - 6275854
Alignment:
Q  483 gtcaggctcacccaaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttct 582  Q
    |||||| ||||||| |||||||||||||||||| ||||| || || |||||||| || |||||||| |||||||||||||||||||| ||||| ||||||    
T  6275745 gtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttct 6275844  T
Q  583 tgtctgtagt 592  Q
    ||||| ||||    
T  6275845 tgtctatagt 6275854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 483 - 592
Target Start/End: Original strand, 6322606 - 6322715
Alignment:
Q  483 gtcaggctcacccaaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttct 582  Q
    |||||| |||||||| |||||||| |||||||| ||||| ||||||||   |||||||||||  || |||||||||||||||||||||||||||||||||    
T  6322606 gtcaggatcacccaagtcattgtaaacatcgtagtcatagattctatcgtgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttct 6322705  T
Q  583 tgtctgtagt 592  Q
    | ||| ||||    
T  6322706 tctctatagt 6322715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 6322224 - 6322352
Alignment:
Q  94 ttattgagttgtaacgtaactacagatctcaattgaggtatgacattctgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtc 193  Q
    |||||||||||||| |||| | |||||   ||||||||||||| | | ||||| |||||||||||||||||||||||||| ||||| |||||   ||| |    
T  6322224 ttattgagttgtaatgtaattgcagattgtaattgaggtatgaaactttgagaagctgatttgagtatgtaaacaagaaaatctgaagacttcaagtgac 6322323  T
Q  194 caaatgattcatctcttggaaggtaaaca 222  Q
    |||||| |||||||||||||| |||||||    
T  6322324 caaatgcttcatctcttggaacgtaaaca 6322352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 490 - 592
Target Start/End: Original strand, 6264927 - 6265029
Alignment:
Q  490 tcacccaaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttcttgtctgt 589  Q
    ||||||||||||||||| ||||| |||||||| | ||| |||||||| |||||||| || |||||||||||||||||||||||||| |||  |||||| |    
T  6264927 tcacccaaatcattgtaaacatcataatcataaactctgtcccattctttgcgctcccccgttccatctcctcttaaagtcttcaactctaattgtctat 6265026  T
Q  590 agt 592  Q
    |||    
T  6265027 agt 6265029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 236 - 337
Target Start/End: Original strand, 6370995 - 6371097
Alignment:
Q  236 tctcactcttaggatctgttcaaatatataataacaatat-atgttttagaaacaataccaaaatctttagaatcataagcagggtaaacatttggatca 334  Q
    ||||| |||| ||||||||||| || ||| ||||||| || |||||| || |||||||| |||||||||||||||||||| || ||||||||||||||||    
T  6370995 tctcagtctttggatctgttcatatttatgataacaaaattatgtttcagcaacaatactaaaatctttagaatcataagtagagtaaacatttggatca 6371094  T
Q  335 acc 337  Q
    |||    
T  6371095 acc 6371097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 493 - 583
Target Start/End: Original strand, 6458262 - 6458352
Alignment:
Q  493 cccaaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttctt 583  Q
    ||||||||||| || | ||| |||||||| | |||||||  ||| |||||||||||||||||||||||||||| ||||| ||| |||||||    
T  6458262 cccaaatcattataaatatcataatcataaactctatccgcttctttgcgctctccagttccatctcctcttagagtctgcaactcttctt 6458352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 498 - 583
Target Start/End: Original strand, 6452174 - 6452259
Alignment:
Q  498 atcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttctt 583  Q
    |||||| || ||||| ||||| ||||| ||||||||||| ||||| ||||| |||||||||||||||| | ||| ||| |||||||    
T  6452174 atcattataaacatcataatcgtatatcctatcccattctttgcgttctccggttccatctcctcttagattctgcaactcttctt 6452259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 6289828 - 6289908
Alignment:
Q  142 tgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaatgattcatctcttggaaggtaaaca 222  Q
    |||||||||||||| |||| || | ||||||| ||||| |||||  ||||  ||||||||||||||||||||| |||||||    
T  6289828 tgagatgctgatttcagtaggttatcaagaaattctgaagacttcttgtgatcaaatgattcatctcttggaatgtaaaca 6289908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 496 - 583
Target Start/End: Original strand, 42694394 - 42694481
Alignment:
Q  496 aaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttctt 583  Q
    ||||||||||||||||| |||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||| | |||||||||||||    
T  42694394 aaatcattgtagacatcataatcatagattctttcccattctttgcgttctcctgttccatctcctcttaaattgttcaattcttctt 42694481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 493 - 592
Target Start/End: Complemental strand, 36744021 - 36743922
Alignment:
Q  493 cccaaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttcttgtctgtagt 592  Q
    |||||||||||||| ||||| |||||||| ||||| ||||||||||  |||| | | ||||||||||| |||||||| | ||||||| | ||||||||||    
T  36744021 cccaaatcattgtaaacatcataatcatagattctgtcccattcctcacgctttgctgttccatctccccttaaagtatccaattctacatgtctgtagt 36743922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 498 - 592
Target Start/End: Complemental strand, 9603168 - 9603074
Alignment:
Q  498 atcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttcttgtctgtagt 592  Q
    ||||||||||||||| |||||||| | ||| |||||||| || || | |||||| ||||||||||||| | | | ||||||||||||||||||||    
T  9603168 atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagt 9603074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University