View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13988_low_1 (Length: 688)
Name: NF13988_low_1
Description: NF13988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13988_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 8 - 673
Target Start/End: Complemental strand, 33905883 - 33905212
Alignment:
| Q |
8 |
gatgactactgatgggttattatttcagctgcagatggttggaaggtatgtctcattggagtgttagagactagacaacttcatgaaagctctcaatgat |
107 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33905883 |
gatgaataatgatgggttattatttcagctgcagatggttggaaggtatgtctcattggagtgttagagactagacaacttcatgaaagctctcaatgat |
33905784 |
T |
|
| Q |
108 |
aaaacaccaaatctatccacacacatacacataaaaatacaactacaatagatagtgttacatcttaaatatttttcaattctaaaggggaaaagataag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33905783 |
aaaacaccaaatctatccacacacatacacataaaaatacaactacaatagatagtgttacatcttaaatatttttcaattctaaaggggaaaagataag |
33905684 |
T |
|
| Q |
208 |
aaagaaatgaaactacaaaaggtttcttcaaatgaagaccaaaataaattttcattctacattaatacttcaattcaaaccaatagtagaatcatatttc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33905683 |
aaagaaatgaaactacaaaaggtttcttcaaatgaagaccaaaagaaattttcattctacattaatacttcaattccaaccaatagtagaatcatatttc |
33905584 |
T |
|
| Q |
308 |
caaaatctt---ctttcctaaatca---ttacaatgtcaatttcactatcaaaatcataactatattgtatataaaaagattcttgaatttctaaagaca |
401 |
Q |
| |
|
| ||||| | | ||| | || | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33905583 |
ctaaatcatgaaccttcatgcattaacgttacaatgtcaatttcactatcaaaatcataactatattgtatataaaaacattcttgaatttctaaagaca |
33905484 |
T |
|
| Q |
402 |
aaacttcatgtaccaatatcaccaaaaattaggtggtgcatgtattgatttatgccccttatatttattattaccataaagggctctaaaaaatctccta |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33905483 |
aaacttcatgtaccaatatcaccaaaaattaggtggtgcatgtattgatttatgccccttatatttattattaccataaagggctctaaaaaatctccta |
33905384 |
T |
|
| Q |
502 |
gacctgtttgttttcaacttcataaaaggaaccttacgtgaaacagcttgccaaatcatttgaacagcatcaccttccttagaagggaactgaaattcaa |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33905383 |
gacctgtttgttttcaacttcataaaaggaaccttacgtgaaacagcttgccaaatcatttcaacagcatcaccttccttagaagggaactgaaattcaa |
33905284 |
T |
|
| Q |
602 |
agaatttttcaacttctttcaatctgttccacattcttgtccattcatctttgccaatactcctaatgaagt |
673 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33905283 |
agaatttttcaacttctttcaatctgttccacattcttgtccattcatctttgccaatactcctaatgaagt |
33905212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 514 - 671
Target Start/End: Original strand, 9326228 - 9326385
Alignment:
| Q |
514 |
ttcaacttcataaaaggaaccttacgtgaaacagcttgccaaatcatttgaacagcatcaccttccttagaagggaactgaaattcaaagaatttttcaa |
613 |
Q |
| |
|
||||| |||||| ||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| || || | | |||||||||| | ||||| |
|
|
| T |
9326228 |
ttcaatttcatagaaggaactttatgtgaaacagcttgccaaatcatttgtacagcatcaccttccttagatggaaaattatattcaaagaaatgttcaa |
9326327 |
T |
|
| Q |
614 |
cttctttcaatctgttccacattcttgtccattcatctttgccaatactcctaatgaa |
671 |
Q |
| |
|
| |||||||| ||||||||||| ||||||| || |||||||| |||||||| ||||| |
|
|
| T |
9326328 |
cctctttcaacttgttccacatttttgtccactcttctttgcctatactcctgatgaa |
9326385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University