View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13988_low_6 (Length: 384)
Name: NF13988_low_6
Description: NF13988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13988_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 256 - 366
Target Start/End: Original strand, 40465190 - 40465300
Alignment:
| Q |
256 |
ttacttcctcaatgatgataaagaatatnnnnnnnggataatgccaatgagaatctaaagggtgtaatatggaacatggagagaaagacaaaatggttca |
355 |
Q |
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| T |
40465190 |
ttacttcctcaatgatgataaagaatataaaaaaaggataatgccaatgagaatctaaagggtgtaatatggaacatggagagaaagacaaaatggttca |
40465289 |
T |
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| Q |
356 |
gaaggataaac |
366 |
Q |
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| T |
40465290 |
gaaggataaac |
40465300 |
T |
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Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 40464936 - 40465026
Alignment:
| Q |
1 |
ttaatgatgtatgacatatttcgaataaaagtatctttagtggagcttatttatagtgaactaaaataaaaagttgtcgcaaaaagcttcc |
91 |
Q |
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| T |
40464936 |
ttaattatgtatgacatatttcgaataaaattatctttagtggagtttatttatagggaactaaaataaaaagttgtcgcaaaaagcttcc |
40465026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 40465088 - 40465150
Alignment:
| Q |
154 |
gacaattattgttgaacgaattaaatattagatttatatggccaagcttaaatttatgatagg |
216 |
Q |
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| T |
40465088 |
gacaattattgttgaacgaattaaatattagatttatatggccaagcttaaatttatgatagg |
40465150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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