View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13988_low_8 (Length: 236)
Name: NF13988_low_8
Description: NF13988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13988_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 3379057 - 3378851
Alignment:
| Q |
19 |
cacacgccagccttgggttcctaaggtgaaaacctctataactggtggtaaatgatcaaatatgaaatccaaagaagaaattctcactagtttataacac |
118 |
Q |
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| T |
3379057 |
cacacgccagccttgggttcctaaggtgaaaacctctataactggtggtaaatgatcaaatatgaaatccaaagaagaaattctcactagtttataacag |
3378958 |
T |
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| Q |
119 |
ctactgtcttcttgacaaccaagtgcaacaacaacagttttaggatccatgtccataccaggtactctatgatacacccctgtaatgggattccaaacca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3378957 |
ctactgtcttcttgacaaccaagtgcaacaacaacagttttaggatccatgtccataccaggtactctatgatacacccctgtaatgggattccaaacca |
3378858 |
T |
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| Q |
219 |
acacagg |
225 |
Q |
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||||||| |
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| T |
3378857 |
acacagg |
3378851 |
T |
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