View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13989_high_1 (Length: 789)

Name: NF13989_high_1
Description: NF13989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13989_high_1
NF13989_high_1
[»] chr5 (7 HSPs)
chr5 (435-608)||(40684732-40684905)
chr5 (22-122)||(40684636-40684736)
chr5 (609-767)||(21249362-21249520)
chr5 (34-188)||(40679516-40679670)
chr5 (675-725)||(21249511-21249561)
chr5 (693-739)||(21249579-21249625)
chr5 (611-656)||(21249633-21249678)
[»] chr1 (16 HSPs)
chr1 (607-740)||(10824585-10824718)
chr1 (611-739)||(37189565-37189693)
chr1 (608-779)||(22683140-22683311)
chr1 (626-740)||(18844476-18844590)
chr1 (607-740)||(19056367-19056500)
chr1 (607-727)||(18844677-18844798)
chr1 (609-734)||(37189368-37189492)
chr1 (610-740)||(15825737-15825865)
chr1 (609-740)||(19056150-19056281)
chr1 (624-737)||(10824383-10824496)
chr1 (652-740)||(22683357-22683445)
chr1 (675-727)||(22683290-22683342)
chr1 (675-728)||(10824514-10824567)
chr1 (675-716)||(19056307-19056348)
chr1 (675-725)||(18844608-18844658)
chr1 (675-720)||(37189496-37189541)
[»] chr8 (17 HSPs)
chr8 (608-740)||(13884488-13884620)
chr8 (609-738)||(13884706-13884835)
chr8 (607-739)||(42126380-42126512)
chr8 (608-740)||(29714541-29714673)
chr8 (627-740)||(2554066-2554179)
chr8 (609-739)||(42126601-42126731)
chr8 (607-740)||(11867898-11868030)
chr8 (609-720)||(29714778-29714889)
chr8 (608-706)||(43416262-43416360)
chr8 (658-737)||(14996678-14996758)
chr8 (678-728)||(2554002-2554052)
chr8 (675-720)||(14996608-14996653)
chr8 (648-740)||(15862540-15862632)
chr8 (675-728)||(29714691-29714744)
chr8 (627-735)||(26745959-26746067)
chr8 (627-735)||(26745281-26745389)
chr8 (675-720)||(42126532-42126577)
[»] chr2 (21 HSPs)
chr2 (609-779)||(16973064-16973234)
chr2 (608-740)||(2916377-2916509)
chr2 (611-740)||(44594454-44594583)
chr2 (607-727)||(44594246-44594367)
chr2 (608-739)||(40987656-40987787)
chr2 (627-740)||(38982773-38982886)
chr2 (608-740)||(16973280-16973412)
chr2 (607-720)||(11533680-11533794)
chr2 (600-739)||(13559519-13559657)
chr2 (609-740)||(38982557-38982688)
chr2 (612-740)||(2916593-2916721)
chr2 (615-767)||(40987835-40987987)
chr2 (634-739)||(24125876-24125975)
chr2 (634-739)||(24126146-24126245)
chr2 (609-676)||(24125670-24125737)
chr2 (675-728)||(16973213-16973266)
chr2 (675-728)||(44594383-44594436)
chr2 (662-739)||(13559357-13559434)
chr2 (675-728)||(38982702-38982755)
chr2 (675-720)||(2916526-2916571)
chr2 (675-720)||(24125812-24125857)
[»] scaffold0060 (1 HSPs)
scaffold0060 (608-740)||(22921-23053)
[»] chr7 (17 HSPs)
chr7 (607-739)||(28715640-28715772)
chr7 (607-720)||(30862216-30862329)
chr7 (607-740)||(28715858-28715991)
chr7 (608-740)||(41985909-41986041)
chr7 (600-740)||(6474271-6474412)
chr7 (607-740)||(6474497-6474629)
chr7 (626-739)||(47373679-47373792)
chr7 (612-740)||(30862436-30862564)
chr7 (609-740)||(47373462-47373595)
chr7 (608-681)||(41986183-41986256)
chr7 (627-735)||(38408121-38408229)
chr7 (627-735)||(6271188-6271296)
chr7 (675-725)||(41986058-41986108)
chr7 (627-716)||(6270237-6270326)
chr7 (675-720)||(47373612-47373657)
chr7 (607-663)||(22226665-22226721)
chr7 (627-735)||(38407450-38407558)
[»] chr3 (13 HSPs)
chr3 (608-740)||(51663466-51663598)
chr3 (608-739)||(40244624-40244756)
chr3 (611-739)||(46003465-46003593)
chr3 (609-740)||(51663250-51663381)
chr3 (608-739)||(20537925-20538056)
chr3 (610-740)||(20538150-20538280)
chr3 (602-740)||(46003241-46003379)
chr3 (612-720)||(40364194-40364301)
chr3 (608-740)||(40364040-40364172)
chr3 (608-671)||(40244873-40244936)
chr3 (675-728)||(46003393-46003446)
chr3 (675-720)||(20538076-20538121)
chr3 (675-720)||(51663399-51663444)
[»] scaffold0781 (1 HSPs)
scaffold0781 (609-720)||(5271-5382)
[»] chr6 (15 HSPs)
chr6 (609-720)||(2216814-2216925)
chr6 (608-740)||(24798624-24798756)
chr6 (607-735)||(24798843-24798971)
chr6 (614-739)||(11643754-11643879)
chr6 (607-703)||(24690353-24690449)
chr6 (607-720)||(11643985-11644097)
chr6 (609-739)||(18494949-18495079)
chr6 (607-739)||(18494732-18494862)
chr6 (611-695)||(24690607-24690691)
chr6 (675-720)||(11643898-11643943)
chr6 (627-716)||(9954825-9954914)
chr6 (627-735)||(9955590-9955698)
chr6 (674-726)||(24798770-24798822)
chr6 (675-728)||(18494878-18494931)
chr6 (675-728)||(24690504-24690557)
[»] chr4 (13 HSPs)
chr4 (607-740)||(39161286-39161419)
chr4 (596-740)||(39161503-39161647)
chr4 (601-740)||(55173469-55173608)
chr4 (608-720)||(50509364-50509476)
chr4 (607-740)||(47097016-47097146)
chr4 (609-728)||(55173334-55173454)
chr4 (607-739)||(47096798-47096928)
chr4 (612-720)||(37996068-37996176)
chr4 (609-656)||(2623451-2623498)
chr4 (627-710)||(9738136-9738219)
chr4 (675-728)||(47096947-47097001)
chr4 (675-727)||(39161436-39161488)
chr4 (627-701)||(9738937-9739011)
[»] scaffold0034 (1 HSPs)
scaffold0034 (661-725)||(108047-108111)
[»] scaffold0036 (1 HSPs)
scaffold0036 (626-735)||(61042-61151)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 5e-86; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 435 - 608
Target Start/End: Original strand, 40684732 - 40684905
Alignment:
Q  435 tgttattccacaatagaaatatcgtcatccatttgaaacttattcttccaaatttgtctgtatattctagtaactgttcaatcagtggcacgagataagg 534  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  40684732 tgttattgcacaatagaaatatcgtcatccatttgaaacttattcttccaaatttgtttgtatattttagtaactgttcaatcagtggcacgagataagg 40684831  T
Q  535 ccacaccacgccataaattacactgaaaaattaccatgaggaagtataaaagtgattttttattataaaaagta 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40684832 ccacaccacgccataaattacactgaaaaattaccatgaggaagtataaaagtgattttttattataaaaagta 40684905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 40684636 - 40684736
Alignment:
Q  22 cacggactgggtggtttataggaacaccttcgccaagcgaagctgaaacaagaggtaccttataaacaagagttgtcgaagaagaattacattccgtgtt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40684636 cacggactgggtggtttataggaacaccttcgccaagcgaagctgaaacaagaggtaccttataaacaagagttgtcgaagaagaattacattccgtgtt 40684735  T
Q  122 a 122  Q
    |    
T  40684736 a 40684736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 609 - 767
Target Start/End: Original strand, 21249362 - 21249520
Alignment:
Q  609 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 708  Q
    |||||||||||||| | ||||||||| | ||||| ||||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||||||||    
T  21249362 ggcttattcaatcacctggtcccttaccgtaattgattgtctcaatttggtcccctaattataaattgtaccaatttagtcccctatgttttgcttcgtt 21249461  T
Q  709 actagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatt 767  Q
    |||||||||| | ||||||| |||||||||||       |||||||||||||| |||||    
T  21249462 actagttttaatcctttctgttagtttctctcaaaaaaatgttaacttatgtaccaatt 21249520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 34 - 188
Target Start/End: Original strand, 40679516 - 40679670
Alignment:
Q  34 ggtttataggaacaccttcgccaagcgaagctgaaacaagaggtaccttataaacaagagttgtcgaagaagaattacattccgtgttagccaagatatc 133  Q
    ||||||||||||||||||||||||| |||||||||  ||||||||  ||||||||||||||| ||  |||| || | |||  | ||||| ||||||||||    
T  40679516 ggtttataggaacaccttcgccaagtgaagctgaagaaagaggtagattataaacaagagttttcatagaaaaagtgcatctcatgttatccaagatatc 40679615  T
Q  134 aacacattcatttgcttctcaatacacatgagatatctcaacattctacaataac 188  Q
    |||||||| |||||||||||||||||| |||||||| ||||||| |||| |||||    
T  40679616 aacacatttatttgcttctcaatacacttgagatatttcaacatgctactataac 40679670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 675 - 725
Target Start/End: Original strand, 21249511 - 21249561
Alignment:
Q  675 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 725  Q
    ||||||||||||||||| |||||||||||  ||||||||||||||| ||||    
T  21249511 tgtaccaatttggtcccttatgttttgctctgttactagttttagtccttt 21249561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 693 - 739
Target Start/End: Complemental strand, 21249625 - 21249579
Alignment:
Q  693 tatgttttgcttcgttactagttttagttctttctggtagtttctct 739  Q
    ||||||||||| ||||| |||||||||| ||||||| ||||||||||    
T  21249625 tatgttttgctccgttattagttttagtcctttctgttagtttctct 21249579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 611 - 656
Target Start/End: Complemental strand, 21249678 - 21249633
Alignment:
Q  611 cttattcaatcatccggtcccttaacttaattaattgtctcaattt 656  Q
    ||||||||||||||  |||||||||||||||| ||||||| |||||    
T  21249678 cttattcaatcatcttgtcccttaacttaattgattgtcttaattt 21249633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 2e-57; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 607 - 740
Target Start/End: Complemental strand, 10824718 - 10824585
Alignment:
Q  607 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 706  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10824718 taggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcg 10824619  T
Q  707 ttactagttttagttctttctggtagtttctctc 740  Q
    |||||||||||||| |||||| ||||||||||||    
T  10824618 ttactagttttagtcctttctagtagtttctctc 10824585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 611 - 739
Target Start/End: Complemental strand, 37189693 - 37189565
Alignment:
Q  611 cttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 710  Q
    |||||||||||| | ||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37189693 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccctatctataatttgtaccaatttggtcccctatgttttgcttcgttac 37189594  T
Q  711 tagttttagttctttctggtagtttctct 739  Q
    ||||||||||  |||||||||||||||||    
T  37189593 tagttttagtcatttctggtagtttctct 37189565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 608 - 779
Target Start/End: Original strand, 22683140 - 22683311
Alignment:
Q  608 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 707  Q
    ||||||||||||||| ||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  22683140 aggcttattcaatcacccgctcctttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgctttgt 22683239  T
Q  708 tactagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaattgtgtcccctatg 779  Q
    ||||||||||||| ||||||| |||||||||||        ||||||||||||| |||||  ||||||||||    
T  22683240 tactagttttagtcctttctgttagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccctatg 22683311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 626 - 740
Target Start/End: Original strand, 18844476 - 18844590
Alignment:
Q  626 ggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 725  Q
    ||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||    
T  18844476 ggtcccttaacttaattgattatctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgttactagttttagtcattt 18844575  T
Q  726 ctggtagtttctctc 740  Q
    |||||||||||||||    
T  18844576 ctggtagtttctctc 18844590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 607 - 740
Target Start/End: Complemental strand, 19056500 - 19056367
Alignment:
Q  607 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 706  Q
    |||||||||||||||||||||||||||||||||||| ||||| | ||||| |||||||||||||||| ||||||||||||||  |||||||||||||| |    
T  19056500 taggcttattcaatcatccggtcccttaacttaattgattgttttaatttggtcccctaactataatctgtaccaatttggtatcctatgttttgctttg 19056401  T
Q  707 ttactagttttagttctttctggtagtttctctc 740  Q
    ||||||||||||||  ||||||  ||||||||||    
T  19056400 ttactagttttagtcatttctgtcagtttctctc 19056367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 607 - 727
Target Start/End: Complemental strand, 18844798 - 18844677
Alignment:
Q  607 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtc-ccctaactataatttgtaccaatttggtcccctatgttttgcttc 705  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||||||||| ||  |||||||||||||||||| ||||||||||| |||||||||||| |    
T  18844798 taggcttattcaatcacccgatcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctcc 18844699  T
Q  706 gttactagttttagttctttct 727  Q
    ||||||||||||||||||||||    
T  18844698 gttactagttttagttctttct 18844677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 609 - 734
Target Start/End: Original strand, 37189368 - 37189492
Alignment:
Q  609 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 708  Q
    |||||||||||||| ||||||| ||||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||| |||||||||||| ||||    
T  37189368 ggcttattcaatcacccggtcc-ttaacttaattgattgtctcaatttggtctcataactataatttgtaccaatttggtcctctatgttttgctccgtt 37189466  T
Q  709 actagttttagttctttctggtagtt 734  Q
    |||||||||||| ||||||| |||||    
T  37189467 actagttttagtcctttctgttagtt 37189492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 610 - 740
Target Start/End: Complemental strand, 15825865 - 15825737
Alignment:
Q  610 gcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtta 709  Q
    ||||||||||||| |||||| |||||||||||| ||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||| ||||    
T  15825865 gcttattcaatcacccggtctcttaacttaattgattgtctcaatttggtcc--taactataatttgtaccaatttggtcccctatgttttgctttgtta 15825768  T
Q  710 ctagttttagttctttctggtagtttctctc 740  Q
     |||||||||| |||| |  |||||||||||    
T  15825767 ttagttttagtcctttttattagtttctctc 15825737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 609 - 740
Target Start/End: Original strand, 19056150 - 19056281
Alignment:
Q  609 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 708  Q
    |||||||||||||| | | ||||||||||||||| ||||| | ||||| ||||||||| ||||||||||| |||||||||||||||| |||||||| |||    
T  19056150 ggcttattcaatcacctgatcccttaacttaattgattgtattaatttggtcccctaattataatttgtatcaatttggtcccctatattttgctttgtt 19056249  T
Q  709 actagttttagttctttctggtagtttctctc 740  Q
    ||||||||||||  |||||| |||||||||||    
T  19056250 actagttttagtcttttctgttagtttctctc 19056281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 624 - 737
Target Start/End: Original strand, 10824383 - 10824496
Alignment:
Q  624 ccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttct 723  Q
    ||||||| ||||||||||| ||| |  |||||| ||||||||| ||||||||||| ||||||||||| |||||||||||| |||||||||||||||| ||    
T  10824383 ccggtcctttaacttaattgattattgcaatttggtcccctaattataatttgtatcaatttggtcctctatgttttgctccgttactagttttagtcct 10824482  T
Q  724 ttctggtagtttct 737  Q
    ||||| ||||||||    
T  10824483 ttctgttagtttct 10824496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 652 - 740
Target Start/End: Complemental strand, 22683445 - 22683357
Alignment:
Q  652 aatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctggtagtttctctc 740  Q
    ||||| ||||||||||| | ||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||  |||||||||||    
T  22683445 aatttggtcccctaacttttatttgtaccaatttggtcctctatgttttgctccgttactagttttagtcctttctcttagtttctctc 22683357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 675 - 727
Target Start/End: Original strand, 22683290 - 22683342
Alignment:
Q  675 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttct 727  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  22683290 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttct 22683342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 675 - 728
Target Start/End: Complemental strand, 10824567 - 10824514
Alignment:
Q  675 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 728  Q
    |||||||||||| |||||||||||||||| |||| ||||||||||| |||||||    
T  10824567 tgtaccaatttgatcccctatgttttgctccgttcctagttttagtcctttctg 10824514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 675 - 716
Target Start/End: Complemental strand, 19056348 - 19056307
Alignment:
Q  675 tgtaccaatttggtcccctatgttttgcttcgttactagttt 716  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  19056348 tgtaccaatttggtcccctgtgttttgcttcgttactagttt 19056307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 675 - 725
Target Start/End: Original strand, 18844608 - 18844658
Alignment:
Q  675 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 725  Q
    ||||||||||| |||||||||||||| || |||| ||||||||||| ||||    
T  18844608 tgtaccaatttagtcccctatgttttactccgttcctagttttagtccttt 18844658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 675 - 720
Target Start/End: Complemental strand, 37189541 - 37189496
Alignment:
Q  675 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 720  Q
    |||||||||| |||||||| ||||||||| |||| |||||||||||    
T  37189541 tgtaccaattcggtcccctgtgttttgctccgttcctagttttagt 37189496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 2e-54; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 608 - 740
Target Start/End: Original strand, 13884488 - 13884620
Alignment:
Q  608 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 707  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13884488 aggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggccccctatgttttgcttcgt 13884587  T
Q  708 tactagttttagttctttctggtagtttctctc 740  Q
    |||||||||||||  ||||||||||||||||||    
T  13884588 tactagttttagtcttttctggtagtttctctc 13884620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 609 - 738
Target Start/End: Complemental strand, 13884835 - 13884706
Alignment:
Q  609 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 708  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13884835 ggcttattcaatcacccggtcccttaacttaattgattgtctcaatttagtcccctaactataatttgtaccaatttggtcctctatgttttgcttcgtt 13884736  T
Q  709 actagttttagttctttctggtagtttctc 738  Q
    ||| |||||||| |||| || |||||||||    
T  13884735 actggttttagtcctttttgttagtttctc 13884706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 607 - 739
Target Start/End: Original strand, 42126380 - 42126512
Alignment:
Q  607 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 706  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||  | | |||||||||||||||| |||||||| ||||||||||||||||||    
T  42126380 taggcttattcaatcacccggtcccttaacttaattaattgtctcaatttgattctctaactataatttgtatcaatttggccccctatgttttgcttcg 42126479  T
Q  707 ttactagttttagttctttctggtagtttctct 739  Q
     ||||||||||||| ||||||||||||||||||    
T  42126480 ctactagttttagtcctttctggtagtttctct 42126512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 608 - 740
Target Start/End: Original strand, 29714541 - 29714673
Alignment:
Q  608 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 707  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| ||||||| ||||||||||||||||||||||| |||||||| ||    
T  29714541 aggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccaaactatagtttgtaccaatttggtcccctatattttgctttgt 29714640  T
Q  708 tactagttttagttctttctggtagtttctctc 740  Q
    |||||| |||| |  |||||| |||||||||||    
T  29714641 tactagctttaatcatttctgttagtttctctc 29714673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 627 - 740
Target Start/End: Complemental strand, 2554179 - 2554066
Alignment:
Q  627 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 726  Q
    |||||||||||||||| |||||||||||||  ||||||||||||||||||| ||||||||||| |||||||||||||| |||||| ||||||||||||||    
T  2554179 gtcccttaacttaattgattgtctcaatttgatcccctaactataatttgttccaatttggtctcctatgttttgctttgttacttgttttagttctttc 2554080  T
Q  727 tggtagtttctctc 740  Q
    || |||||||||||    
T  2554079 tgttagtttctctc 2554066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 609 - 739
Target Start/End: Complemental strand, 42126731 - 42126601
Alignment:
Q  609 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 708  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||  |||||||||||||||||||||||||||||||| ||| ||||||||  ||     
T  42126731 ggcttattcaatcacccggtcccttaacttaattgattatctcaatttgatcccctaactataatttgtaccaatttggtcctctaagttttgctctgtc 42126632  T
Q  709 actagttttagttctttctggtagtttctct 739  Q
    |||| |||||||  |||||| ||||||||||    
T  42126631 actaattttagtcatttctgttagtttctct 42126601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 607 - 740
Target Start/End: Complemental strand, 11868030 - 11867898
Alignment:
Q  607 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 706  Q
    |||||||||||||||| | ||||| ||||||||||| ||||||||||||| || || ||||||||||||||| ||||||||||| |||||||||| || |    
T  11868030 taggcttattcaatcacctggtcc-ttaacttaattgattgtctcaatttggttccttaactataatttgtatcaatttggtcctctatgttttgatttg 11867932  T
Q  707 ttactagttttagttctttctggtagtttctctc 740  Q
    | |||||||||||| |||| || |||||||||||    
T  11867931 tcactagttttagtcctttatgttagtttctctc 11867898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 609 - 720
Target Start/End: Complemental strand, 29714889 - 29714778
Alignment:
Q  609 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 708  Q
    ||||||||  |||| | ||||||||||||||||| ||||| | ||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||| ||    
T  29714889 ggcttatttgatcacctggtcccttaacttaattgattgttttaatttggtcccttaactataatttgtatcaatttggtcctctatgttttgcttcatt 29714790  T
Q  709 actagttttagt 720  Q
    ||||||||||||    
T  29714789 actagttttagt 29714778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 608 - 706
Target Start/End: Original strand, 43416262 - 43416360
Alignment:
Q  608 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 706  Q
    |||||||||||||||| ||||| |||||||||||| ||||||| |||||| |||||||||||||||||||| ||||||  || ||||||||||| ||||    
T  43416262 aggcttattcaatcattcggtctcttaacttaattgattgtcttaatttaatcccctaactataatttgtatcaatttaatctcctatgttttgtttcg 43416360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 658 - 737
Target Start/End: Complemental strand, 14996758 - 14996678
Alignment:
Q  658 gtcccctaactataatttgtaccaatttggtcccc-tatgttttgcttcgttactagttttagttctttctggtagtttct 737  Q
    ||||||||| ||||||||||||||||||| ||||| |||||||||||| ||||||||||||||| ||||||| ||||||||    
T  14996758 gtcccctaattataatttgtaccaatttgatccccctatgttttgctttgttactagttttagtcctttctgttagtttct 14996678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 678 - 728
Target Start/End: Original strand, 2554002 - 2554052
Alignment:
Q  678 accaatttggtcccctatgttttgcttcgttactagttttagttctttctg 728  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  2554002 accaatttggtcccctatgttttacttcgttactagttttagtcctttctg 2554052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 675 - 720
Target Start/End: Original strand, 14996608 - 14996653
Alignment:
Q  675 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 720  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  14996608 tgtactaatttggtcccctatgttttgcttcgttactagttttagt 14996653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 648 - 740
Target Start/End: Complemental strand, 15862632 - 15862540
Alignment:
Q  648 tctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctggtagtttctctc 740  Q
    |||||||||  ||||||||||||||||||||  |||||||||| ||||| |||||| ||||||| |||||| | |||||   |||||||||||    
T  15862632 tctcaatttgatcccctaactataatttgtattaatttggtcctctatgatttgctccgttactggttttaatactttccattagtttctctc 15862540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 675 - 728
Target Start/End: Original strand, 29714691 - 29714744
Alignment:
Q  675 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 728  Q
    ||||||||||||||| |||||||||| || |||||||||||||||| |||||||    
T  29714691 tgtaccaatttggtctcctatgttttactccgttactagttttagtcctttctg 29714744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 627 - 735
Target Start/End: Complemental strand, 26746067 - 26745959
Alignment:
Q  627 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 726  Q
    ||||||||||||| ||  |||| |||| || ||||||||| ||||||||||||||| || |||| ||| |||||||| | |||| |||||  || |||||    
T  26746067 gtcccttaacttatttgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccattaccagtttcggtcctttc 26745968  T
Q  727 tggtagttt 735  Q
    || ||||||    
T  26745967 tgttagttt 26745959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 735
Target Start/End: Original strand, 26745281 - 26745389
Alignment:
Q  627 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 726  Q
    ||||||||||||||||  ||||   || || ||||||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  || |||||    
T  26745281 gtcccttaacttaattgtttgtactaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctttc 26745380  T
Q  727 tggtagttt 735  Q
    || ||||||    
T  26745381 tgttagttt 26745389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 675 - 720
Target Start/End: Original strand, 42126532 - 42126577
Alignment:
Q  675 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 720  Q
    |||| |||||||||||||||||||||||| ||||  ||||||||||    
T  42126532 tgtatcaatttggtcccctatgttttgctccgttcttagttttagt 42126577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 1e-52; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 609 - 779
Target Start/End: Original strand, 16973064 - 16973234
Alignment:
Q  609 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 708  Q
    |||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16973064 ggcttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactatagtttgtaccaatttggtcccctatgttttgcttcgtt 16973163  T
Q  709 actagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaattgtgtcccctatg 779  Q
    |||||||||| ||||||||| |||||||||||        ||||||||||||| |||||  ||||||||||    
T  16973164 actagttttaattctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccctatg 16973234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 608 - 740
Target Start/End: Original strand, 2916377 - 2916509
Alignment:
Q  608 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 707  Q
    ||||||||||||||| ||| || |||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2916377 aggcttattcaatcacccgatctcttaacttaattgattgtctcaatttgatcccctaactataatttgtaccaatttggtcccctatgttttgctttgt 2916476  T
Q  708 tactagttttagttctttctggtagtttctctc 740  Q
    ||||||||||| | ||||||| |||||||||||    
T  2916477 tactagttttaatcctttctgttagtttctctc 2916509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 611 - 740
Target Start/End: Complemental strand, 44594583 - 44594454
Alignment:
Q  611 cttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 710  Q
    |||||||||||| ||||||| |||| |||||| ||||||||||||| ||||||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  44594583 cttattcaatcacccggtcctttaatttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtccattatgttttgcttcgttac 44594484  T
Q  711 tagttttagttctttctggtagtttctctc 740  Q
    ||||||||||  ||||||||||||||||||    
T  44594483 tagttttagtcatttctggtagtttctctc 44594454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 607 - 727
Target Start/End: Original strand, 44594246 - 44594367
Alignment:
Q  607 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtc-ccctaactataatttgtaccaatttggtcccctatgttttgcttc 705  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||| ||  |||||||||||||||||| ||||||||||| ||||||||||||      
T  44594246 taggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctct 44594345  T
Q  706 gttactagttttagttctttct 727  Q
    ||||||||||||||||||||||    
T  44594346 gttactagttttagttctttct 44594367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 608 - 739
Target Start/End: Original strand, 40987656 - 40987787
Alignment:
Q  608 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 707  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||| ||| | ||||||||| || ||    
T  40987656 aggcttatttaatcatccggtcccttaacttaattgattgtctcaatttggttccctaactataatttgtaccaatttagtctcatatgttttgatttgt 40987755  T
Q  708 tactagttttagttctttctggtagtttctct 739  Q
    |||||||||||||  ||| || ||||||||||    
T  40987756 tactagttttagtcttttatgttagtttctct 40987787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 627 - 740
Target Start/End: Complemental strand, 38982886 - 38982773
Alignment:
Q  627 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 726  Q
    |||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||| || ||||||||||||| ||||||||||||||  ||||    
T  38982886 gtcccttaacttaattgattgtctcaatttggtcccttaactataatttgtatcaatttggttccttatgttttgcttcattactagttttagtcatttc 38982787  T
Q  727 tggtagtttctctc 740  Q
    ||||||||||||||    
T  38982786 tggtagtttctctc 38982773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 608 - 740
Target Start/End: Complemental strand, 16973412 - 16973280
Alignment:
Q  608 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 707  Q
    |||||||||||||||   ||||||||||||||||| ||||||||||||| ||||||||||||||||||||  ||||||||||| |||||||||||| | |    
T  16973412 aggcttattcaatcacatggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtgtcaatttggtcctctatgttttgctccat 16973313  T
Q  708 tactagttttagttctttctggtagtttctctc 740  Q
    |||||||||||||  ||||||  ||||||||||    
T  16973312 tactagttttagtcatttctgtcagtttctctc 16973280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 607 - 720
Target Start/End: Complemental strand, 11533794 - 11533680
Alignment:
Q  607 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggt-cccctatgttttgcttc 705  Q
    |||||||||||||||||| |||| |||||||||| | ||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||     
T  11533794 taggcttattcaatcatcaggtctcttaacttaagtgattgtctcaatttggtcccccaactataatttgtaccaatttggtccccctatgttttgcttt 11533695  T
Q  706 gttactagttttagt 720  Q
     ||||||||||||||    
T  11533694 attactagttttagt 11533680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 600 - 739
Target Start/End: Complemental strand, 13559657 - 13559519
Alignment:
Q  600 taaaaagtaggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttt 699  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| || |||||||||||||||||| ||| |||||||| | || ||    
T  13559657 taaaaaataggcttattcaatcatccggtcccttaacttaattgattgtttcaatttggttccctaactataatttgtatcaa-ttggtcccttgtgctt 13559559  T
Q  700 tgcttcgttactagttttagttctttctggtagtttctct 739  Q
    ||||  |||||||| ||||||  ||| || ||||||||||    
T  13559558 tgctctgttactagatttagtcatttatgttagtttctct 13559519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 609 - 740
Target Start/End: Original strand, 38982557 - 38982688
Alignment:
Q  609 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 708  Q
    |||||| ||||||| ||| ||| ||||||||||| ||||||||||||| |  |||||||||||||||||||||||||||||   ||||||||||||||||    
T  38982557 ggcttaatcaatcacccgatcctttaacttaattgattgtctcaatttggctccctaactataatttgtaccaatttggtcatttatgttttgcttcgtt 38982656  T
Q  709 actagttttagttctttctggtagtttctctc 740  Q
     ||||||||||| ||||||  ||||| |||||    
T  38982657 gctagttttagtcctttctattagttactctc 38982688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 612 - 740
Target Start/End: Complemental strand, 2916721 - 2916593
Alignment:
Q  612 ttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttact 711  Q
    |||||||||||||   | ||||||||||||| ||||||||||||| ||||||||||||| ||||||||||| ||| ||| |||| |||||||  ||||||    
T  2916721 ttattcaatcatctaattccttaacttaattgattgtctcaatttggtcccctaactattatttgtaccaacttgatcctctatattttgctctgttact 2916622  T
Q  712 agttttagttctttctggtagtttctctc 740  Q
    |||||| || ||||||| |||||||||||    
T  2916621 agttttggtcctttctgttagtttctctc 2916593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 615 - 767
Target Start/End: Complemental strand, 40987987 - 40987835
Alignment:
Q  615 ttcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagt 714  Q
    |||||||| |||||| ||||||||||||||||||||||||||  ||| ||||||||||||||||  ||||||||||||||| |||||||   || ||| |    
T  40987987 ttcaatcacccggtctcttaacttaattaattgtctcaatttgatcctctaactataatttgtattaatttggtcccctatattttgctctattgctaat 40987888  T
Q  715 tttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatt 767  Q
    ||||||  |||||| |||||||||||        |||||||||||||||||||    
T  40987887 tttagtcatttctgttagtttctctcaaaaaaccgttaacttatgtatcaatt 40987835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 634 - 739
Target Start/End: Complemental strand, 24125975 - 24125876
Alignment:
Q  634 aacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctggtagt 733  Q
    ||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||      ||||||||||||||||||| ||||    
T  24125975 aacttaattaattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagttctttctgttagt 24125882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 634 - 739
Target Start/End: Complemental strand, 24126245 - 24126146
Alignment:
Q  634 aacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctggtagt 733  Q
    ||||||||| ||| ||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||      ||||||||||| |||| || ||||    
T  24126245 aacttaattgattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagtcctttatgttagt 24126152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 609 - 676
Target Start/End: Original strand, 24125670 - 24125737
Alignment:
Q  609 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttg 676  Q
    |||||||||| ||| ||||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  24125670 ggcttattcactcaaccggtcccttaacttaattgattgtctcaatttgatcccctaactataatttg 24125737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 675 - 728
Target Start/End: Original strand, 16973213 - 16973266
Alignment:
Q  675 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 728  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  16973213 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttctg 16973266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 675 - 728
Target Start/End: Complemental strand, 44594436 - 44594383
Alignment:
Q  675 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 728  Q
    ||||||||||| ||||||||||||||||| |||| ||||||||||| |||||||    
T  44594436 tgtaccaatttagtcccctatgttttgctccgttcctagttttagtcctttctg 44594383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 739
Target Start/End: Original strand, 13559357 - 13559434
Alignment:
Q  662 cctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctggtagtttctct 739  Q
    ||||||||||||||||  |||||||||| | ||| ||||| || |||| ||||||||||  |||||| ||||||||||    
T  13559357 cctaactataatttgtttcaatttggtctcatatattttgttttgttattagttttagtcatttctgttagtttctct 13559434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 675 - 728
Target Start/End: Complemental strand, 38982755 - 38982702
Alignment:
Q  675 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 728  Q
    ||||||||||||||||| ||||||||||| |||| || |||||||| |||||||    
T  38982755 tgtaccaatttggtcccttatgttttgctccgttcctggttttagtcctttctg 38982702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 675 - 720
Target Start/End: Original strand, 2916526 - 2916571
Alignment:
Q  675 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 720  Q
    ||||||||||||||||||||  ||||||| ||||| ||||||||||    
T  2916526 tgtaccaatttggtcccctacattttgctccgttattagttttagt 2916571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 675 - 720
Target Start/End: Complemental strand, 24125857 - 24125812
Alignment:
Q  675 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 720  Q
    |||| ||||||||||||||||||||||||  |||| ||||||||||    
T  24125857 tgtatcaatttggtcccctatgttttgctctgttattagttttagt 24125812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 97; Significance: 3e-47; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 608 - 740
Target Start/End: Complemental strand, 23053 - 22921
Alignment:
Q  608 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 707  Q
    ||||||||||||||| ||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |||    
T  23053 aggcttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcctctatgttttgctccgt 22954  T
Q  708 tactagttttagttctttctggtagtttctctc 740  Q
    ||||||||||||| ||||||| |||||||||||    
T  22953 tactagttttagtcctttctgttagtttctctc 22921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 3e-47; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 607 - 739
Target Start/End: Original strand, 28715640 - 28715772
Alignment:
Q  607 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 706  Q
    |||| ||||||||||| ||||||||||||||||||||||||| | ||||| ||  ||||||||||||||||| |||||||||||||||||||||||||||    
T  28715640 taggtttattcaatcacccggtcccttaacttaattaattgttttaatttggtttcctaactataatttgtatcaatttggtcccctatgttttgcttcg 28715739  T
Q  707 ttactagttttagttctttctggtagtttctct 739  Q
    |||||||||||||| ||||||||||||||||||    
T  28715740 ttactagttttagtcctttctggtagtttctct 28715772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 607 - 720
Target Start/End: Original strand, 30862216 - 30862329
Alignment:
Q  607 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 706  Q
    ||||||||||||||||| |||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |    
T  30862216 taggcttattcaatcattcggtcccttaacttaattgattgtctgaatttggtcccctaactataatttgtaccaatttggtcccctatattttgctttg 30862315  T
Q  707 ttactagttttagt 720  Q
    ||||||||||||||    
T  30862316 ttactagttttagt 30862329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 607 - 740
Target Start/End: Complemental strand, 28715991 - 28715858
Alignment:
Q  607 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 706  Q
    |||||||||||||| | ||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||||||||  |    
T  28715991 taggcttattcaattacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcctctaagttttgctcag 28715892  T
Q  707 ttactagttttagttctttctggtagtttctctc 740  Q
    | ||||||||||||  |||||| |||||||||||    
T  28715891 tcactagttttagtcatttctgttagtttctctc 28715858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 608 - 740
Target Start/End: Original strand, 41985909 - 41986041
Alignment:
Q  608 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 707  Q
    ||||||||||||||| || |||||||||||||||| |||||||||||||  |||||||||||||||||||  |||||||||||| |||||||||||| ||    
T  41985909 aggcttattcaatcacccagtcccttaacttaattgattgtctcaatttgatcccctaactataatttgtttcaatttggtcccatatgttttgctttgt 41986008  T
Q  708 tactagttttagttctttctggtagtttctctc 740  Q
    ||||| ||||||| ||||| | |||||||||||    
T  41986009 tactaattttagtcctttccgttagtttctctc 41986041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 600 - 740
Target Start/End: Original strand, 6474271 - 6474412
Alignment:
Q  600 taaaaagtaggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatg-tt 698  Q
    |||||| || ||||||||||| | | | ||||||||||||||| |||||||||||||  ||||||||||||||||| || ||||||||||||||||| ||    
T  6474271 taaaaattatgcttattcaattaccggatcccttaacttaattgattgtctcaatttgatcccctaactataatttatatcaatttggtcccctatgttt 6474370  T
Q  699 ttgcttcgttactagttttagttctttctggtagtttctctc 740  Q
    |||||| |||||||||||||||  |||||| |||||||||||    
T  6474371 ttgctttgttactagttttagtcttttctgttagtttctctc 6474412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 607 - 740
Target Start/End: Complemental strand, 6474629 - 6474497
Alignment:
Q  607 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 706  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||| ||||| ||| ||||||||||| ||||||| ||||| |||| |||| ||||||  |    
T  6474629 taggcttattcaatcacccgatcccttaacttaattgattgtcttaatttggtctcctaactataa-ttgtaccgatttgctcccttatgctttgctctg 6474531  T
Q  707 ttactagttttagttctttctggtagtttctctc 740  Q
    |||||||||||||| |||| || |||||||||||    
T  6474530 ttactagttttagtcctttatgttagtttctctc 6474497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 626 - 739
Target Start/End: Complemental strand, 47373792 - 47373679
Alignment:
Q  626 ggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 725  Q
    ||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||| ||| | ||||||||| |  ||||||||||||| | ||||    
T  47373792 ggtcccttaacttaattgattgtctcaatttggtcccctaattataatttgtaccaatttagtctcatatgttttgatgtgttactagttttaatccttt 47373693  T
Q  726 ctggtagtttctct 739  Q
     || ||||||||||    
T  47373692 atgttagtttctct 47373679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 612 - 740
Target Start/End: Complemental strand, 30862564 - 30862436
Alignment:
Q  612 ttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttact 711  Q
    |||||||||||   |||||||||| | |||| ||||| ||||||| || |||||||||||||||||| |||||||||||| |||||||||||  ||||||    
T  30862564 ttattcaatcaattggtcccttaattgaattgattgtttcaattttgttccctaactataatttgtatcaatttggtcccttatgttttgctctgttact 30862465  T
Q  712 agttttagttctttctggtagtttctctc 740  Q
    | |||||||  |||||| |||||||||||    
T  30862464 aattttagtcttttctgttagtttctctc 30862436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 609 - 740
Target Start/End: Original strand, 47373462 - 47373595
Alignment:
Q  609 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactata--atttgtaccaatttggtcccctatgttttgcttcg 706  Q
    ||||||||||||||  || || |||||||||||| |||||||||||||  ||| |||| ||||  ||||||||||||||||||||||||||||||||  |    
T  47373462 ggcttattcaatcactcgatctcttaacttaattgattgtctcaatttgatcctctaattatataatttgtaccaatttggtcccctatgttttgctctg 47373561  T
Q  707 ttactagttttagttctttctggtagtttctctc 740  Q
    || |||||||||||  ||| || |||||||||||    
T  47373562 ttgctagttttagtcatttatgttagtttctctc 47373595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 608 - 681
Target Start/End: Complemental strand, 41986256 - 41986183
Alignment:
Q  608 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtacca 681  Q
    ||||||||||||||| ||||| |||||||||||||  ||||||||||||  |||||||||||||||||||||||    
T  41986256 aggcttattcaatcacccggttccttaacttaattgtttgtctcaatttgatcccctaactataatttgtacca 41986183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 627 - 735
Target Start/End: Complemental strand, 38408229 - 38408121
Alignment:
Q  627 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 726  Q
    ||||||||||||||||  |||| |||| || ||||||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  || |||||    
T  38408229 gtcccttaacttaattgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctttc 38408130  T
Q  727 tggtagttt 735  Q
    || ||||||    
T  38408129 tgttagttt 38408121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 627 - 735
Target Start/End: Complemental strand, 6271296 - 6271188
Alignment:
Q  627 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 726  Q
    ||||||||||||||||  || |  ||| || ||||||||| ||||||||||||||| || ||||  || |||||||| ||||||||||||  || |||||    
T  6271296 gtcccttaacttaattgtttctaccaaattggtcccctaaatataatttgtaccaaattcgtcctttaagttttgctccgttactagtttcggtcctttc 6271197  T
Q  727 tggtagttt 735  Q
    || ||||||    
T  6271196 tgttagttt 6271188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 675 - 725
Target Start/End: Complemental strand, 41986108 - 41986058
Alignment:
Q  675 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 725  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||||| ||||    
T  41986108 tgtaccaatttggtcccctatgttttgctccgttgctaattttagtccttt 41986058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 716
Target Start/End: Original strand, 6270237 - 6270326
Alignment:
Q  627 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttt 716  Q
    ||||||||||||||||| ||||   || || ||| ||||| ||||||||||||||| || |||| ||| || ||||| ||||||||||||    
T  6270237 gtcccttaacttaattatttgtactaaattggtcgcctaaatataatttgtaccaaattcgtcctctaagtgttgctccgttactagttt 6270326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 675 - 720
Target Start/End: Original strand, 47373612 - 47373657
Alignment:
Q  675 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 720  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||||||    
T  47373612 tgtaccaatttagtcccctatgttttgctccgttattagttttagt 47373657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 607 - 663
Target Start/End: Complemental strand, 22226721 - 22226665
Alignment:
Q  607 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccc 663  Q
    |||||||||||||||| | | ||||||| ||||||| ||||||||||||| ||||||    
T  22226721 taggcttattcaatcacctgatcccttagcttaattgattgtctcaatttggtcccc 22226665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 735
Target Start/End: Original strand, 38407450 - 38407558
Alignment:
Q  627 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 726  Q
    |||||||||||||||   ||||  ||| || ||||||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  || |||||    
T  38407450 gtcccttaacttaatggtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctttc 38407549  T
Q  727 tggtagttt 735  Q
    || ||||||    
T  38407550 tgttagttt 38407558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 3e-47; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 608 - 740
Target Start/End: Complemental strand, 51663598 - 51663466
Alignment:
Q  608 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 707  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||  ||    
T  51663598 aggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtagcaatttggtcctctatgttttgctatgt 51663499  T
Q  708 tactagttttagttctttctggtagtttctctc 740  Q
    |||||||||||||  |||||| |||||||||||    
T  51663498 tactagttttagtcatttctgttagtttctctc 51663466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 608 - 739
Target Start/End: Original strand, 40244624 - 40244756
Alignment:
Q  608 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttgg-tcccctatgttttgcttcg 706  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| |    
T  40244624 aggcttattcaatcatccgatcccttaacttaattgattgtctcaatttggtcccttaactataatttgtaccaatttggttcccctatgttttgctttg 40244723  T
Q  707 ttactagttttagttctttctggtagtttctct 739  Q
    ||||||||||||||  |||||| ||||||||||    
T  40244724 ttactagttttagtcatttctgttagtttctct 40244756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 611 - 739
Target Start/End: Complemental strand, 46003593 - 46003465
Alignment:
Q  611 cttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 710  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| |||||| ||||||||||| ||||    
T  46003593 cttatttaatcatctggtcccttaacttaattgattgtctcaatttggtcccctaactaaaatttgtaccaatttgatcccctttgttttgcttcattac 46003494  T
Q  711 tagttttagttctttctggtagtttctct 739  Q
    |||||||||| ||||||||||||||||||    
T  46003493 tagttttagtcctttctggtagtttctct 46003465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 609 - 740
Target Start/End: Original strand, 51663250 - 51663381
Alignment:
Q  609 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 708  Q
    |||||||| ||||| |||||| |||||||||||| ||||| | ||| | |||| |||||||||||||||| |||||| ||||||||||||||||||||||    
T  51663250 ggcttatttaatcacccggtctcttaacttaattgattgttttaatatggtccactaactataatttgtatcaatttagtcccctatgttttgcttcgtt 51663349  T
Q  709 actagttttagttctttctggtagtttctctc 740  Q
    ||||||||||||  ||||||||||||||||||    
T  51663350 actagttttagtcatttctggtagtttctctc 51663381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 608 - 739
Target Start/End: Original strand, 20537925 - 20538056
Alignment:
Q  608 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 707  Q
    |||| |||| ||||||| ||||||||||||||||| ||  | |||||||  ||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  20537925 aggcctattgaatcatctggtcccttaacttaattgatattatcaatttgatcccctaactataatttgttccaatttggtcccctatgttttgcttcat 20538024  T
Q  708 tactagttttagttctttctggtagtttctct 739  Q
    ||||||||||||| ||||||  ||||||||||    
T  20538025 tactagttttagtcctttctattagtttctct 20538056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 610 - 740
Target Start/End: Complemental strand, 20538280 - 20538150
Alignment:
Q  610 gcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtta 709  Q
    ||||||||||||| ||||||| |||| |||||| |||||||||||||  |||||||||||||||||||| |||||| ||   |||||||||||| |||||    
T  20538280 gcttattcaatcacccggtcctttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttagttatctatgttttgctccgtta 20538181  T
Q  710 ctagttttagttctttctggtagtttctctc 740  Q
    |||||||||||  |||||| |||||||||||    
T  20538180 ctagttttagtcatttctgttagtttctctc 20538150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 602 - 740
Target Start/End: Original strand, 46003241 - 46003379
Alignment:
Q  602 aaaagtaggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttg 701  Q
    ||||||||| ||||||||||| ||||||| ||||||||||| ||||| | ||||| ||||||||||||||||||||| ||||||||||| ||||||| ||    
T  46003241 aaaagtaggtttattcaatcacccggtcctttaacttaattgattgttttaatttggtcccctaactataatttgtatcaatttggtcctctatgttctg 46003340  T
Q  702 cttcgttactagttttagttctttctggtagtttctctc 740  Q
     |  ||||| ||||||||| |||| || |||||||||||    
T  46003341 ttctgttacaagttttagtcctttttgttagtttctctc 46003379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 612 - 720
Target Start/End: Complemental strand, 40364301 - 40364194
Alignment:
Q  612 ttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttact 711  Q
    |||||||||||   ||||||||||||||||| ||||| ||||||| ||| ||||||||||||||||||||||||| | |||||||||||| | |||||||    
T  40364301 ttattcaatcacttggtcccttaacttaattgattgtttcaatttggtctcctaactataatttgtaccaatttgat-ccctatgttttgttccgttact 40364203  T
Q  712 agttttagt 720  Q
    |||||||||    
T  40364202 agttttagt 40364194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 608 - 740
Target Start/End: Original strand, 40364040 - 40364172
Alignment:
Q  608 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 707  Q
    |||||||||| |||| ||  ||||||||||||||| ||| ||| ||||| ||||| ||| ||||||||||| ||||||| |||||| | ||||||| |||    
T  40364040 aggcttattcgatcacccaatcccttaacttaattgattatcttaatttggtcccataattataatttgtatcaatttgatcccctgtattttgctccgt 40364139  T
Q  708 tactagttttagttctttctggtagtttctctc 740  Q
    || ||||||||||  ||| || |||||||||||    
T  40364140 tattagttttagtcatttttgttagtttctctc 40364172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 608 - 671
Target Start/End: Complemental strand, 40244936 - 40244873
Alignment:
Q  608 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactata 671  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||||| ||||||||||||||    
T  40244936 aggcttattcaatcaccccgtcccttaacttaattgattgtctcaatttggtcccctaactata 40244873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 675 - 728
Target Start/End: Complemental strand, 46003446 - 46003393
Alignment:
Q  675 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 728  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  46003446 tgtaccaatttggtcctctatgttttgcttcgttactagttttagtcctttctg 46003393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 675 - 720
Target Start/End: Original strand, 20538076 - 20538121
Alignment:
Q  675 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 720  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||    
T  20538076 tgtaccaatttggtcccctatgttttgctttgttattagttttagt 20538121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 675 - 720
Target Start/End: Original strand, 51663399 - 51663444
Alignment:
Q  675 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 720  Q
    ||||| |||||||||||||||||||||||  ||| |||||||||||    
T  51663399 tgtactaatttggtcccctatgttttgctctgttcctagttttagt 51663444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 609 - 720
Target Start/End: Complemental strand, 5382 - 5271
Alignment:
Q  609 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 708  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5382 ggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgtt 5283  T
Q  709 actagttttagt 720  Q
    | ||||||||||    
T  5282 attagttttagt 5271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 1e-46; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 609 - 720
Target Start/End: Complemental strand, 2216925 - 2216814
Alignment:
Q  609 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 708  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2216925 ggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgtt 2216826  T
Q  709 actagttttagt 720  Q
    | ||||||||||    
T  2216825 attagttttagt 2216814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 608 - 740
Target Start/End: Original strand, 24798624 - 24798756
Alignment:
Q  608 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 707  Q
    ||||||||||||| || ||||||||||||||||||  |||| ||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  24798624 aggcttattcaattattcggtcccttaacttaattggttgtttcaatttggtcccctgactataatttgtaccaatttggtcctctatgttttgcttcgt 24798723  T
Q  708 tactagttttagttctttctggtagtttctctc 740  Q
    |||||||||||||  |||||| |||||||||||    
T  24798724 tactagttttagtcatttctgttagtttctctc 24798756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 607 - 735
Target Start/End: Complemental strand, 24798971 - 24798843
Alignment:
Q  607 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 706  Q
    |||||||||||||||| ||| |||||||| |||||| ||||||| |||||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  24798971 taggcttattcaatcacccgatcccttaaattaattgattgtcttaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgcttcg 24798872  T
Q  707 ttactagttttagttctttctggtagttt 735  Q
    |||||||||||||| |||||| |||||||    
T  24798871 ttactagttttagtcctttctagtagttt 24798843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 614 - 739
Target Start/End: Original strand, 11643754 - 11643879
Alignment:
Q  614 attcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactag 713  Q
    ||||||||| |||||||||||| |||||| |||||||||||||  |||||||||||||||||||| ||||||||| |||||||||||| || ||||||||    
T  11643754 attcaatcacccggtcccttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttggttccctatgttttgttttgttactag 11643853  T
Q  714 ttttagttctttctggtagtttctct 739  Q
    ||||||| || |||| ||||||||||    
T  11643854 ttttagtcctctctgttagtttctct 11643879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 607 - 703
Target Start/End: Original strand, 24690353 - 24690449
Alignment:
Q  607 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgct 703  Q
    |||||||||||||||| |||||| |||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||    
T  24690353 taggcttattcaatcacccggtctcttaacttaattgattgtctcaatttggtccccttactataatttgtaccaatttggtcctctatgttttgct 24690449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 607 - 720
Target Start/End: Complemental strand, 11644097 - 11643985
Alignment:
Q  607 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagt-cccctaactataatttgtaccaatttggtcccctatgttttgcttc 705  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||| || ||||||||||||||||||| ||||||||| ||||||||||| |||     
T  11644097 taggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccctaactataatttgtatcaatttggt-ccctatgtttt-cttt 11644000  T
Q  706 gttactagttttagt 720  Q
    |||||||||||||||    
T  11643999 gttactagttttagt 11643985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 609 - 739
Target Start/End: Complemental strand, 18495079 - 18494949
Alignment:
Q  609 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 708  Q
    ||||||||||||||||  |||||||||||||||| ||| | | |||||  |||| ||||||||||||||| |||||||||||||||| ||||| | ||||    
T  18495079 ggcttattcaatcatctagtcccttaacttaattgattatattaatttgatcccttaactataatttgtatcaatttggtcccctatattttgatccgtt 18494980  T
Q  709 actagttttagttctttctggtagtttctct 739  Q
    | |||||||||||||||||| ||||||||||    
T  18494979 attagttttagttctttctgttagtttctct 18494949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 607 - 739
Target Start/End: Original strand, 18494732 - 18494862
Alignment:
Q  607 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 706  Q
    ||||||||||||||||   ||||||||||||| ||| ||||||||||||| || ||||| ||||||||||||||| |||||||||||||| ||||||| |    
T  18494732 taggcttattcaatcacatggtcccttaactttattgattgtctcaatttggt-ccctagctataatttgtaccattttggtcccctatg-tttgctttg 18494829  T
Q  707 ttactagttttagttctttctggtagtttctct 739  Q
    |||||||||||||| |||| || ||||||||||    
T  18494830 ttactagttttagtcctttttgttagtttctct 18494862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 611 - 695
Target Start/End: Complemental strand, 24690691 - 24690607
Alignment:
Q  611 cttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctat 695  Q
    |||||||||||| ||| ||||||||||||||| ||||| | ||||| || |||||||||||||||||||||||||||||||||||    
T  24690691 cttattcaatcacccgatcccttaacttaattgattgttttaatttggttccctaactataatttgtaccaatttggtcccctat 24690607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 675 - 720
Target Start/End: Original strand, 11643898 - 11643943
Alignment:
Q  675 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 720  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  11643898 tgtaccaatttggtcccctatgttttgctccgttactagttttagt 11643943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 627 - 716
Target Start/End: Original strand, 9954825 - 9954914
Alignment:
Q  627 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttt 716  Q
    ||||||||||||||||  ||||  ||| || ||||||||| ||||||||||||||| || |||| ||| |||||||| |||||| |||||    
T  9954825 gtcccttaacttaattgtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccgttaccagttt 9954914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 627 - 735
Target Start/End: Complemental strand, 9955698 - 9955590
Alignment:
Q  627 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 726  Q
    ||||||||||||||||  |||| |||| || ||||||||| ||||||||||||||| ||  ||| ||| ||||||||  ||||| |||||  || |||||    
T  9955698 gtcccttaacttaattgtttgtatcaaattggtcccctaaatataatttgtaccaaattcatcctctaagttttgctctgttaccagtttcggtcctttc 9955599  T
Q  727 tggtagttt 735  Q
    || ||||||    
T  9955598 tgttagttt 9955590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 674 - 726
Target Start/End: Complemental strand, 24798822 - 24798770
Alignment:
Q  674 ttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 726  Q
    ||||| |||||||||||||||||||||||| |||| ||||||||||| |||||    
T  24798822 ttgtatcaatttggtcccctatgttttgctccgttcctagttttagtcctttc 24798770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 675 - 728
Target Start/End: Complemental strand, 18494931 - 18494878
Alignment:
Q  675 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 728  Q
    |||| |||||||||||||||| ||| |||   ||||||||||||||||||||||    
T  18494931 tgtagcaatttggtcccctatatttcgctctattactagttttagttctttctg 18494878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 675 - 728
Target Start/End: Complemental strand, 24690557 - 24690504
Alignment:
Q  675 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 728  Q
    ||||||||||||||| |||||||||||||   ||| |||||||||| |||||||    
T  24690557 tgtaccaatttggtctcctatgttttgctctattaatagttttagtcctttctg 24690504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 2e-45; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 607 - 740
Target Start/End: Original strand, 39161286 - 39161419
Alignment:
Q  607 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 706  Q
    |||||||||||||||| ||| ||| ||||||||||| | ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39161286 taggcttattcaatcacccgatcctttaacttaattgaatgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 39161385  T
Q  707 ttactagttttagttctttctggtagtttctctc 740  Q
    |||||||||||||| |||||||  ||||||||||    
T  39161386 ttactagttttagtcctttctgaaagtttctctc 39161419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 596 - 740
Target Start/End: Complemental strand, 39161647 - 39161503
Alignment:
Q  596 attataaaaagtaggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctat 695  Q
    |||||||||  ||||||||||||| |||||||| ||||||||||||| ||||| | ||||| |||||||||||||||||||||||||||| |||| ||||    
T  39161647 attataaaatctaggcttattcaaccatccggttccttaacttaattgattgttttaatttggtcccctaactataatttgtaccaatttagtcctctat 39161548  T
Q  696 gttttgcttcgttactagttttagttctttctggtagtttctctc 740  Q
    |||||||| ||||| |||||||||| ||||||| |||||||||||    
T  39161547 gttttgctccgttattagttttagtcctttctgttagtttctctc 39161503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 601 - 740
Target Start/End: Complemental strand, 55173608 - 55173469
Alignment:
Q  601 aaaaagtaggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgtttt 700  Q
    ||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||  || ||||||||||||||||||||||||||||||||||| |||    
T  55173608 aaaaattaggcttattcaatcacccggtcccttaacttaattgattgtctcaatttgatctcctaactataatttgtaccaatttggtcccctatgcttt 55173509  T
Q  701 gcttcgttactagttttagttctttctggtagtttctctc 740  Q
    |||| |||||| ||||||||  ||| || |||||||||||    
T  55173508 gctttgttacttgttttagtcttttttgctagtttctctc 55173469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 608 - 720
Target Start/End: Complemental strand, 50509476 - 50509364
Alignment:
Q  608 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 707  Q
    ||||||||||||||||| | ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  50509476 aggcttattcaatcatctgatcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgt 50509377  T
Q  708 tactagttttagt 720  Q
    ||||| |||||||    
T  50509376 tactaattttagt 50509364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 607 - 740
Target Start/End: Complemental strand, 47097146 - 47097016
Alignment:
Q  607 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 706  Q
    |||||||||||||||||||| || |||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |   |||||||||||  ||    
T  47097146 taggcttattcaatcatccgatctcttaacttaattgattgtctcaatttagtcctctaactataatttgtaccaatttgat---ctatgttttgccccg 47097050  T
Q  707 ttactagttttagttctttctggtagtttctctc 740  Q
    ||||||||||||||  ||| || |||||||||||    
T  47097049 ttactagttttagtcatttttgttagtttctctc 47097016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 609 - 728
Target Start/End: Original strand, 55173334 - 55173454
Alignment:
Q  609 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggt-cccctatgttttgcttcgt 707  Q
    ||||||||| |||||||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||||  |||||||| ||||||| ||||||| |||    
T  55173334 ggcttattcgatcatccggttccttaacttaattgattgtcttaatttggtcccctaactataatttgtattaatttggtccccctatattttgctccgt 55173433  T
Q  708 tactagttttagttctttctg 728  Q
    ||||||||||||| |||||||    
T  55173434 tactagttttagtcctttctg 55173454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 607 - 739
Target Start/End: Original strand, 47096798 - 47096928
Alignment:
Q  607 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 706  Q
    |||||||||||||||| | | ||||||||||||||| ||| ||||||||| |||||||||| ||||||||||||||||| | ||||||||||||||||||    
T  47096798 taggcttattcaatcacctgatcccttaacttaattgattatctcaatttggtcccctaac-ataatttgtaccaattt-gccccctatgttttgcttcg 47096895  T
Q  707 ttactagttttagttctttctggtagtttctct 739  Q
    ||||| |||||||| |||| || | ||||||||    
T  47096896 ttacttgttttagtcctttatgtttgtttctct 47096928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 612 - 720
Target Start/End: Original strand, 37996068 - 37996176
Alignment:
Q  612 ttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttact 711  Q
    ||||||||||| | | |||||||| | || | ||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| |||| |    
T  37996068 ttattcaatcacctgatcccttaattaaaatgattgtttcaatttggtcccttaactataatttgtatcaatttggtcccctatgttttgctttgttatt 37996167  T
Q  712 agttttagt 720  Q
    |||||||||    
T  37996168 agttttagt 37996176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 609 - 656
Target Start/End: Complemental strand, 2623498 - 2623451
Alignment:
Q  609 ggcttattcaatcatccggtcccttaacttaattaattgtctcaattt 656  Q
    ||||||||||||||  |||||||||||||||||| |||||||||||||    
T  2623498 ggcttattcaatcactcggtcccttaacttaattgattgtctcaattt 2623451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 627 - 710
Target Start/End: Original strand, 9738136 - 9738219
Alignment:
Q  627 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 710  Q
    ||||||||||||||||  ||||  ||| || ||||||||| ||||||||||||||| || |||| ||| |||||||| ||||||    
T  9738136 gtcccttaacttaattgtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccgttac 9738219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 675 - 728
Target Start/End: Original strand, 47096947 - 47097001
Alignment:
Q  675 tgtaccaatttggtcccc-tatgttttgcttcgttactagttttagttctttctg 728  Q
    |||||||||||||||||| ||||||||||| | |||||||||||||| |||||||    
T  47096947 tgtaccaatttggtccccctatgttttgctccattactagttttagtcctttctg 47097001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 675 - 727
Target Start/End: Original strand, 39161436 - 39161488
Alignment:
Q  675 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttct 727  Q
    ||||||||||||||||| ||||||||| | |||| ||||||||||| ||||||    
T  39161436 tgtaccaatttggtcccatatgttttgatccgttcctagttttagtcctttct 39161488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 627 - 701
Target Start/End: Complemental strand, 9739011 - 9738937
Alignment:
Q  627 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttg 701  Q
    |||||||||||| |||  |||| |||| || ||||||||| ||||||||||||||| || |||| ||| ||||||    
T  9739011 gtcccttaacttgattgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttg 9738937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 661 - 725
Target Start/End: Original strand, 108047 - 108111
Alignment:
Q  661 ccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 725  Q
    ||||||| |||||||||| ||||||||||| || ||||||||| | |||||||||||||| ||||    
T  108047 ccctaaccataatttgtatcaatttggtcctctgtgttttgctccattactagttttagtccttt 108111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 735
Target Start/End: Complemental strand, 61151 - 61042
Alignment:
Q  626 ggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 725  Q
    |||||||||||||||||  ||||  ||| || ||||| ||| | ||||||||||||| || |||| ||| |||||||| |||||  |||||  || ||||    
T  61151 ggtcccttaacttaattgtttgtaccaaattggtcccttaaatttaatttgtaccaaattcgtcctctaagttttgctccgttatcagtttaggtccttt 61052  T
Q  726 ctggtagttt 735  Q
    ||| ||||||    
T  61051 ctgttagttt 61042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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