View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13989_high_16 (Length: 247)
Name: NF13989_high_16
Description: NF13989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13989_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 43774270 - 43774502
Alignment:
| Q |
19 |
gtaccacatcataaaatatttcaacaaatattgcgtagtgagatatggtcagacgactgagtaactttttatacaatttatgcctctggtattgctgagg |
118 |
Q |
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| T |
43774270 |
gtaccacatcataaaatatttcaacaaatactgcatagtgagatatggtcagacgactgtgtaactttttatacaatttatgcctctggtattgctgagg |
43774369 |
T |
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| Q |
119 |
atacatttaactgtgta--cacactttaggtcggcccctctgctcggcttgaataagctggtccaagtccaac-----------ataccgaagatttgag |
205 |
Q |
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|||| |||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
43774370 |
atac-tttaactgtgtattgacgctttaggtcggcccctctgctcggcttgaataagttggtccaagtccaacatgatttttggataccgaagatttgag |
43774468 |
T |
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| Q |
206 |
atcctaaactaatgtcttattagtaatttcattt |
239 |
Q |
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|||||||| |||||||||||||||||||| |||| |
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| T |
43774469 |
atcctaaaataatgtcttattagtaatttaattt |
43774502 |
T |
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