View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13989_high_19 (Length: 226)
Name: NF13989_high_19
Description: NF13989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13989_high_19 |
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| [»] scaffold0128 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 7327518 - 7327319
Alignment:
| Q |
11 |
catcatcatcaaatgagggtgtcttgtaagagactagtgagaagtgcgggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcggaaat |
110 |
Q |
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| T |
7327518 |
catcatcatcaaatgagggtgtctcgtaagagactactgagaagttcgggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcagaaat |
7327419 |
T |
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| Q |
111 |
aatagtcttccaagacttacacacacacttgatctgcatcaaagatcttactggaagccttgataagatttcggccataacctcgtcggggagtgtttct |
210 |
Q |
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| T |
7327418 |
aatagtgttccaagacttacacacacacttgatctgcatcaaagatcttactggaagccttgataagatttcggccataacctcgtcggggagtgtttct |
7327319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 7311995 - 7312187
Alignment:
| Q |
11 |
catcatcatcaaatgagggtgtcttgtaagagactagtgagaagtgcgggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcggaaat |
110 |
Q |
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| T |
7311995 |
catcatcatcaaatgtgggtgtcttgtaagagactagcgagaagtgcgggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcagagat |
7312094 |
T |
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| Q |
111 |
aatagtcttccaagacttacacacacacttgatctgcatcaaagatcttactggaagccttgataagatttcggccataacctcgtcggggag |
203 |
Q |
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| T |
7312095 |
aatagtgttccaagacttactcacacacttgatctgcatcaaagttcttactggaagccatgataagatttcggcgatgacctcatcgaggag |
7312187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 7306905 - 7307007
Alignment:
| Q |
52 |
aagtgcgggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcggaaataatagtcttccaagacttacacacacacttgatctgcatca |
151 |
Q |
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| T |
7306905 |
aagtgcgggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatca |
7307004 |
T |
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| Q |
152 |
aag |
154 |
Q |
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||| |
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| T |
7307005 |
aag |
7307007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 145
Target Start/End: Complemental strand, 20455776 - 20455701
Alignment:
| Q |
70 |
gatctattgaggtgcattttgatgaatttaggatcggaaataatagtcttccaagacttacacacacacttgatct |
145 |
Q |
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| T |
20455776 |
gatctattaaggtgtattttgacgaatttagaatcggagataagggttttccaagacttacatacacacttcatct |
20455701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 145
Target Start/End: Complemental strand, 20414147 - 20414072
Alignment:
| Q |
70 |
gatctattgaggtgcattttgatgaatttaggatcggaaataatagtcttccaagacttacacacacacttgatct |
145 |
Q |
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| T |
20414147 |
gatctattaaggtgtattttgacaaatttagaatcggagataagggttttccaagacttacatacacacttcatct |
20414072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 22533935 - 22533863
Alignment:
| Q |
58 |
gggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcggaaataatagtcttccaagacttac |
130 |
Q |
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| T |
22533935 |
gggtttcttgcagaccgattaaggtgcattttggcgaatttaggatcagagataatggttttccaggacttac |
22533863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 203
Target Start/End: Complemental strand, 42297388 - 42297270
Alignment:
| Q |
85 |
attttgatgaatttaggatcggaaataatagtcttccaagacttacacacacacttgatctgcatcaaagatcttactggaagccttgataagatttcgg |
184 |
Q |
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||||||| ||||||||||| ||| || | ||| |||||||| ||| ||||| || |||||||||| |||| | |||||||||| |||||| ||||||| |
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| T |
42297388 |
attttgacgaatttaggattggagattagagtgttccaagaaatacttacacatttcatctgcatcagagatttcactggaagccatgataatatttcgg |
42297289 |
T |
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| Q |
185 |
ccataacctcgtcggggag |
203 |
Q |
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|||| |||||||||||| |
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| T |
42297288 |
tgataagctcgtcggggag |
42297270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 184
Target Start/End: Complemental strand, 3417 - 3312
Alignment:
| Q |
79 |
aggtgcattttgatgaatttaggatcggaaataatagtcttccaagacttacacacacacttgatctgcatcaaagatcttactggaagccttgataaga |
178 |
Q |
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||||||||||||| ||||||||||||||| || | ||| ||||||| | || ||| |||| ||||||||||| ||| | |||||||||| ||||| || |
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| T |
3417 |
aggtgcattttgacgaatttaggatcggagatgagagtgttccaagtatgacttacagacttcatctgcatcaatgatttgactggaagccatgatagga |
3318 |
T |
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| Q |
179 |
tttcgg |
184 |
Q |
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|||||| |
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| T |
3317 |
tttcgg |
3312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 169
Target Start/End: Complemental strand, 24935 - 24814
Alignment:
| Q |
48 |
tgagaagtgcgggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcggaaataatagtcttccaagacttacacacacacttgatctgc |
147 |
Q |
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|||||||| ||||||||||||||||||| | ||||||||||| |||||| ||||| || || | ||| ||||| ||||||| || ||||| |||||| |
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| T |
24935 |
tgagaagtacgggtttcgtgcagatctactaaggtgcattttaatgaatgaaggattagagatgagagttttccatgacttactgacgcacttcatctgc |
24836 |
T |
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| Q |
148 |
atcaaagatcttactggaagcc |
169 |
Q |
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| T |
24835 |
ataagagattttaccggaagcc |
24814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 2576156 - 2576076
Alignment:
| Q |
58 |
gggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcggaaataatagtcttccaagacttacacacacac |
138 |
Q |
| |
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||||||||||| |||| || ||||| | ||| |||||||||||||| |||||||||| |||||||| || || |||||| |
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| T |
2576156 |
gggtttcgtgccgatcgcttaaggtgaagtttaatgaatttaggatcagaaataatagatttccaagatttgcatacacac |
2576076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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