View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13989_high_2 (Length: 592)
Name: NF13989_high_2
Description: NF13989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13989_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 11749088 - 11748978
Alignment:
| Q |
17 |
aaagactgctcctggttgacacaggaagaattcactgcatattttggagtgttggactcttccacattagaggtatttccatgaaatttttattgctatg |
116 |
Q |
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| T |
11749088 |
aaagactgctcctggttgacataggaagaattcactgcatattttggagtgttggacacttccacggtagaggtatgtccatgaaatttttattgctatg |
11748989 |
T |
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| Q |
117 |
gtggtagtaaa |
127 |
Q |
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| T |
11748988 |
gtggtagtaaa |
11748978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 5e-33; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 382 - 494
Target Start/End: Complemental strand, 52010960 - 52010848
Alignment:
| Q |
382 |
gaataggtgctacaacttgaccaatgtggacgagttataactgacgatacgttactttctacattggcaaagtcagcaagctgcttgtctaaattgatca |
481 |
Q |
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| T |
52010960 |
gaataggtgctgcaacttgaccagtgtggacgagttataacagaatatacattactttctacattggcaaagtcaccaagctgcttgtctagattgatta |
52010861 |
T |
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| Q |
482 |
gtctatctctcac |
494 |
Q |
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| T |
52010860 |
gtctatccctcac |
52010848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 345 - 494
Target Start/End: Complemental strand, 51998433 - 51998284
Alignment:
| Q |
345 |
tacaagatcttaatacatgtttgtacannnnnnngtcgaataggtgctacaacttgaccaatgtggacgagttataactgacgatacgttactttctaca |
444 |
Q |
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| T |
51998433 |
tacaagatcttaattcatgtttatacatttatttgtggaataggttctgcaacttcagcaatgtggacgaattataactgaatatacattaccttgtaca |
51998334 |
T |
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| Q |
445 |
ttggcaaagtcagcaagctgcttgtctaaattgatcagtctatctctcac |
494 |
Q |
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| T |
51998333 |
ttggcaaagtcaccaaactgcttgtctagattgattagtctatctctcac |
51998284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 52011279 - 52011204
Alignment:
| Q |
17 |
aaagactgctcctggttgacacaggaagaattcactgcatattttggagtgttggactcttccacattagaggtat |
92 |
Q |
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| T |
52011279 |
aaagattgctcctggttgacagaggaagaattcactaaatgttttggaatgttggacacttccatattagaggtat |
52011204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 419
Target Start/End: Complemental strand, 52000945 - 52000909
Alignment:
| Q |
383 |
aataggtgctacaacttgaccaatgtggacgagttat |
419 |
Q |
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| T |
52000945 |
aataggtgctacaacttgaccaatgtggacgagttat |
52000909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 508 - 574
Target Start/End: Original strand, 14596985 - 14597051
Alignment:
| Q |
508 |
tcactgacccataaatccatcccactctttctccccattctgtcttgtcttcatacctacatgaaat |
574 |
Q |
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| T |
14596985 |
tcactgacccataaatccatcccactctttctccccattctgtcttgtcttcatacctacatgaaat |
14597051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 508 - 570
Target Start/End: Complemental strand, 14611585 - 14611523
Alignment:
| Q |
508 |
tcactgacccataaatccatcccactctttctccccattctgtcttgtcttcatacctacatg |
570 |
Q |
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| T |
14611585 |
tcactgatccataaatccatcccactctgtctccccattctgtcttctcttcgtacctacatg |
14611523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 513 - 564
Target Start/End: Original strand, 12192808 - 12192859
Alignment:
| Q |
513 |
gacccataaatccatcccactctttctccccattctgtcttgtcttcatacc |
564 |
Q |
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||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||| |
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| T |
12192808 |
gacccgtaaatccatccaactctatctccccattcggtcttatcttcatacc |
12192859 |
T |
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