View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13989_high_4 (Length: 467)
Name: NF13989_high_4
Description: NF13989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13989_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 45669837 - 45670122
Alignment:
| Q |
19 |
cttaccacccccatcaaagtaagtgtgataactcccaatattgaaggctttcacaaaaaccaagttgagacgaatatcaggaacatgtctaaaattctct |
118 |
Q |
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| T |
45669837 |
cttaccacccccatcaaagtaagtgcgataactcccaatattgaaggctttcacaaaaatcaagttgagacgaatatcaggaacatgtctaaaattctct |
45669936 |
T |
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| Q |
119 |
agcttgcatccaataccagttttaacccagcatctttcataccaacaaaatgtgttggaaagtttggattgaaaaaggaaagctccacctacattaagga |
218 |
Q |
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| T |
45669937 |
agcttgcatccaataccagttttaaccaagcatctttcataccaacaaaatgtgttggaaagtttggattgaaaaaggaaagctctacctacattaagga |
45670036 |
T |
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| Q |
219 |
gttgctggtgttcagggtcgtctcttggagagtgcaaacaactttataaagctgaacctcaaacttttaggacccaaaataacttt |
304 |
Q |
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| T |
45670037 |
gatgctggtgttcagggtcgtctcttggagagtgcaaacaactccatagagctgaacctcaaacttttaagacccaaaatatcttt |
45670122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 305 - 398
Target Start/End: Original strand, 45671054 - 45671144
Alignment:
| Q |
305 |
tagcttccaattgatttacaacaatattttgaaaaacccgcgtatgctctgccattgagggaataagatttggtgttgtaacggctagagaaat |
398 |
Q |
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| T |
45671054 |
tagcttccaattgatttacaa---tattttgaaaaacccgcgtatgctctgccattgagggaataagatttggtgttgtaacggctagagaaat |
45671144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 28297645 - 28297683
Alignment:
| Q |
79 |
caagttgagacgaatatcaggaacatgtctaaaattctc |
117 |
Q |
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| T |
28297645 |
caagttgagacgaatatcaggaacatgtctaacattctc |
28297683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 21556484 - 21556440
Alignment:
| Q |
74 |
aaaaccaagttgagacgaatatcaggaacatgtctaaaattctct |
118 |
Q |
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| T |
21556484 |
aaaatcaagttgaaacgaatatcaagaacatgtctaacattctct |
21556440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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