View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13989_high_6 (Length: 396)
Name: NF13989_high_6
Description: NF13989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13989_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 10 - 396
Target Start/End: Complemental strand, 28228710 - 28228327
Alignment:
| Q |
10 |
attatactcatgtggagatcttggtgtttagacagcatttttgttgttgtttcctgcacaaatattttgaaaactcaaaacagaactaaagcatattgac |
109 |
Q |
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| T |
28228710 |
attatactcatgtggagatcttggtgtttagacagcattttc--tgttgtttcctgcacaaatattttgaaaactcaaaacagaactaaagcatattgac |
28228613 |
T |
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| Q |
110 |
atttttgtaattnnnnnnnnnnnnnnnnncaaagattttcttaaaccaaatggaccttcaggttatcaattcttgacttattattgaacttgattttgta |
209 |
Q |
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| T |
28228612 |
atttttgtaattaaaagtaaaaataaaaacaaagattttcttaaaccaaatggaccttcaggttatcaattcttgacttattattgaacttgattgtct- |
28228514 |
T |
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| Q |
210 |
ttttgttgaacttgtaggatggagtttttctcgattcgtgaagcatgtttgcggaggaatgtcagtgtgatacataactgctttccagaaagattgacca |
309 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28228513 |
ttttgttgaacttgtaggatggagtttttctcgattcatgaagcatgtttgcggaggaatgtcagtgtgatacataactgctttccagaaagattgacca |
28228414 |
T |
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| Q |
310 |
tatttttgatcctgtacagtgggataatagcactggctgaggatattctgccgagcattatcttaggctaaggaaaagaacattcaa |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
28228413 |
tatttttgatcctgtacagtgggataatagcactggctgaggatattctgccgagcattatctcaggctaaggaaaagagcattcaa |
28228327 |
T |
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