View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13989_high_9 (Length: 336)
Name: NF13989_high_9
Description: NF13989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13989_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 7023657 - 7023992
Alignment:
| Q |
1 |
taaattagcaataaaaatttaaagagagataatatgaaatatgaatctattttttcactaaatttaattaggaaaattaaacgagaatttatagttttgt |
100 |
Q |
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| T |
7023657 |
taaattagcaataaaaatttaaagagagataatatgaaatatgaatctattttttcactaaatttaattaggaaaattaaacgagaatttatagttttgt |
7023756 |
T |
|
| Q |
101 |
atatctaatttggtctataannnnnnnnn---ctgttaataaaaatctacattataatctagactatagttttatatcatttatgttcattttctatgtt |
197 |
Q |
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| T |
7023757 |
atatctaatttggtctataaatttttttttttctgttaataaaaatctacattataatctagactatagttttatatcatttatgttcattttctatgtt |
7023856 |
T |
|
| Q |
198 |
tcatctactcacaccacaaaggtacaacaaccatttcacaccccatcagggaccataaacttattcttttagacgtaa---nnnnnnnctccttcttgtt |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
7023857 |
tcatctactcacaccacaaaggtacaacaaccatttcacaccccatcagggaccataaacttattcttttatacgtaatttttttttattccttcttgtt |
7023956 |
T |
|
| Q |
295 |
tttaaatatggagaagattttaattgtggctgtgag |
330 |
Q |
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||||||||||||||||||||| |||||||||||||| |
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| T |
7023957 |
tttaaatatggagaagatttttattgtggctgtgag |
7023992 |
T |
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