View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13989_low_19 (Length: 240)
Name: NF13989_low_19
Description: NF13989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13989_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 25946136 - 25946347
Alignment:
| Q |
15 |
tattaagtgctgtagatacttgggaaccacaccgcgagataattcctatccacacatgggtgcatccatggctacctctgctagggcacaagatggagag |
114 |
Q |
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| T |
25946136 |
tattaagtgctgtagatacttgggaaccacaccgcgagacaattcctatccacacatgggtgcatccatggctacctctgctagggcacaagatggagag |
25946235 |
T |
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| Q |
115 |
ggagggtatctaccagatggttcgttacaaattgagtaatgctcttggcacatggcacccaagtgatggttctgcatatgctatattgtccccttggaag |
214 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25946236 |
ggagggtatctaccagattgttcgtttcaaattgagtaatgctcttggcacgtggcacccaagtgatggttatgcatatgctatattgtccccttggaag |
25946335 |
T |
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| Q |
215 |
gctttatttgat |
226 |
Q |
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|||||||||||| |
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| T |
25946336 |
gctttatttgat |
25946347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 2662368 - 2662569
Alignment:
| Q |
19 |
aagtgctgtagatacttgggaaccacaccgcgagataattcctatccacacatgggtgcatccatggctacctctgctagggcacaagatggagagggag |
118 |
Q |
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|||||| |||| ||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
2662368 |
aagtgcagtaggtacttgggaaccacatcttgagaccattcctatccacacatgggtgcatccatggctacccctgctagggcacaagctggag------ |
2662461 |
T |
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| Q |
119 |
ggtatctaccagatggttcgttacaaattgagtaatgctcttggcacatggcacccaagtgatggttctgcatatgctatattgtccccttggaaggctt |
218 |
Q |
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| ||||||||||| |||||| ||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2662462 |
gttatctaccagacaattcgtttcaaattgagtactgttcttggtgcatggcacccaagtgatggttctgcatatgctatattgtccccttggaagactg |
2662561 |
T |
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| Q |
219 |
tatttgat |
226 |
Q |
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|||||||| |
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| T |
2662562 |
tatttgat |
2662569 |
T |
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