View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13989_low_20 (Length: 237)

Name: NF13989_low_20
Description: NF13989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13989_low_20
NF13989_low_20
[»] chr4 (6 HSPs)
chr4 (22-189)||(51246621-51246788)
chr4 (22-189)||(17525421-17525590)
chr4 (28-194)||(24853351-24853517)
chr4 (22-194)||(24856236-24856408)
chr4 (33-194)||(28787018-28787182)
chr4 (22-150)||(28787959-28788094)
[»] scaffold0406 (1 HSPs)
scaffold0406 (22-194)||(6279-6451)
[»] chr5 (6 HSPs)
chr5 (22-192)||(5046447-5046625)
chr5 (22-192)||(5047218-5047396)
chr5 (22-192)||(5047989-5048167)
chr5 (64-194)||(5664748-5664877)
chr5 (111-156)||(15063192-15063237)
chr5 (30-90)||(5663780-5663840)
[»] chr7 (1 HSPs)
chr7 (22-194)||(22622302-22622474)
[»] chr3 (3 HSPs)
chr3 (33-193)||(12738201-12738369)
chr3 (22-193)||(12739341-12739523)
chr3 (22-67)||(15023058-15023103)
[»] chr2 (3 HSPs)
chr2 (23-189)||(20978765-20978940)
chr2 (78-143)||(33798822-33798887)
chr2 (56-132)||(19292331-19292408)
[»] chr1 (2 HSPs)
chr1 (22-194)||(22056474-22056639)
chr1 (22-167)||(22055420-22055564)
[»] chr8 (1 HSPs)
chr8 (31-193)||(1275127-1275291)


Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 51246621 - 51246788
Alignment:
Q  22 ctagaatattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagcctttgggatgtaatatcaataatatt 121  Q
    ||||| |||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51246621 ctagattattctagttctagaaacatctacaagcacctataagtagacttatatgggtgcaattgtattcaagcctttgggatgtaatgtcaataatatt 51246720  T
Q  122 gaaggcttcaccaaattatattctctcctcctacagtgagctaattcctaatgtgtgtccttttgtcc 189  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  51246721 gaaggcttcaccaaatcatattctctcctcctacaatgagctaattcctaatgtgtgtcctcttgtcc 51246788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 189
Target Start/End: Complemental strand, 17525590 - 17525421
Alignment:
Q  22 ctagaatattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagcctttgggatgtaa--tatcaataata 119  Q
    ||||| |||||||||||||||||||| |||| || | |||||||||||||||||| ||| ||||||||||||||||||| |||| ||  | |||||||||    
T  17525590 ctagattattctagttctagaaacatctacaagcgcttataaatagacttatatgtgtgaaattgtattcaagcctttgagatgcaatgtgtcaataata 17525491  T
Q  120 ttgaaggcttcaccaaattatattctctcctcctacagtgagctaattcctaatgtgtgtccttttgtcc 189  Q
    ||||||||||||||| || |||||||||||||||||| ||||||||||| |||  |||||||| ||||||    
T  17525490 ttgaaggcttcaccatatcatattctctcctcctacaatgagctaattcataacatgtgtcctcttgtcc 17525421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 194
Target Start/End: Original strand, 24853351 - 24853517
Alignment:
Q  28 tattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagcctttgggatgtaatatcaataatattgaaggc 127  Q
    ||||||||||||| |||||| | |   ||||||||||||||||||| ||| |||||||||||||||||||||  |||| ||| |||||||||||||||||    
T  24853351 tattctagttctaaaaacatcttctaacacctataaatagacttatttggatgcaattgtattcaagcctttaagatgcaatgtcaataatattgaaggc 24853450  T
Q  128 ttcaccaaattatattctctcctcctacagtgagctaattcctaatgtgtgtccttttgtccaatgc 194  Q
    |||| || || ||||||| |||||||||| |||||||||| | ||| |||||||| |||||||||||    
T  24853451 ttcatcatatcatattctttcctcctacaatgagctaattaccaatatgtgtcctcttgtccaatgc 24853517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 194
Target Start/End: Original strand, 24856236 - 24856408
Alignment:
Q  22 ctagaatattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagcctttgggatgtaatatcaataatatt 121  Q
    ||||| |||||||||||||||||||||| |   |||||||||||||||||||  || ||||||||||||| |||||||  |||| ||| |||||||||||    
T  24856236 ctagattattctagttctagaaacattttctaacacctataaatagacttattaggatgcaattgtattccagcctttaagatgcaatgtcaataatatt 24856335  T
Q  122 gaaggcttcaccaaattatattctctcctcctacagtgagctaattcctaatgtgtgtccttttgtccaatgc 194  Q
    ||| | ||||||| || |||||||||||||||||| |||||||||| | ||| |||||| | |||||||||||    
T  24856336 gaaagtttcaccatatcatattctctcctcctacaatgagctaattaccaatatgtgtcatcttgtccaatgc 24856408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 194
Target Start/End: Original strand, 28787018 - 28787182
Alignment:
Q  33 tagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagcctttgggatgtaatatcaataatattgaaggctt--- 129  Q
    ||||||||||||||| | || |||||||||||||||| ||||| |||||||||||||||||||||||  |||| ||| |  ||||||||||||||||       
T  28787018 tagttctagaaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagccttttagatgcaatgtatataatattgaaggcttcac 28787117  T
Q  130 caccaaattatattctctcctcctacagtgagctaattcctaatgtgtgtccttttgtccaatgc 194  Q
    ||||| || ||||| |||||||||| | |||| ||||| |||||||||||||| |||| ||||||    
T  28787118 caccatatcatattatctcctcctataatgaggtaattactaatgtgtgtcctcttgttcaatgc 28787182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 28787959 - 28788094
Alignment:
Q  22 ctagaatattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagcctttgggatgtaatatcaa------- 114  Q
    ||||| |||||||||||||||||||| | ||  ||||||||||||||| |||||||||||||||||||||||||||||  |||| ||| ||||           
T  28787959 ctagattattctagttctagaaacatcttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaataatatt 28788058  T
Q  115 taatattgaaggcttcaccaaattatattctctcct 150  Q
    |||||||||||||||||||| || ||||||||||||    
T  28788059 taatattgaaggcttcaccacatgatattctctcct 28788094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 22 - 194
Target Start/End: Original strand, 6279 - 6451
Alignment:
Q  22 ctagaatattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagcctttgggatgtaatatcaataatatt 121  Q
    ||||| |||||||||||||||||||  | || ||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| |||||||||||    
T  6279 ctagattattctagttctagaaacagcttcaagcacctataaatagacttatatgggtgaaattgtattcaagcctttgagatgcaatgtcaataatatt 6378  T
Q  122 gaaggcttcaccaaattatattctctcctcctacagtgagctaattcctaatgtgtgtccttttgtccaatgc 194  Q
    ||||||||||| |||| ||||| |||||||||| | ||||||||||||||||||||||| | |||||||||||    
T  6379 gaaggcttcacaaaatcatattatctcctcctataatgagctaattcctaatgtgtgtcatcttgtccaatgc 6451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 22 - 192
Target Start/End: Original strand, 5046447 - 5046625
Alignment:
Q  22 ctagaatattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagcct--------ttgggatgtaatatca 113  Q
    ||||| |||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||        ||| |||| ||| |||    
T  5046447 ctagattattctagttttagaaacatctacaagcacctataaatagacttatatgagtgcaattgtattcaagcctttaagccattgagatgcaatgtca 5046546  T
Q  114 ataatattgaaggcttcaccaaattatattctctcctcctacagtgagctaattcctaatgtgtgtccttttgtccaat 192  Q
    ||||||||  ||||||||||| || |||||||||||||||||| ||||||| || | |||| |||||||||||||||||    
T  5046547 ataatattagaggcttcaccatatcatattctctcctcctacaatgagctacttaccaatgcgtgtccttttgtccaat 5046625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 22 - 192
Target Start/End: Original strand, 5047218 - 5047396
Alignment:
Q  22 ctagaatattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagcct--------ttgggatgtaatatca 113  Q
    ||||| |||||||||| ||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||||||        |||  ||| ||| |||    
T  5047218 ctagattattctagttttagaaacatctacaagcacctataaatatacttatatgagtgcaattgtattcaagcctttaagccattgaaatgcaatgtca 5047317  T
Q  114 ataatattgaaggcttcaccaaattatattctctcctcctacagtgagctaattcctaatgtgtgtccttttgtccaat 192  Q
    ||||||||  ||||||||||| || |||||||||||||||||| ||||||| || | |||| |||||||||||||||||    
T  5047318 ataatattagaggcttcaccatatcatattctctcctcctacaatgagctacttaccaatgcgtgtccttttgtccaat 5047396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 192
Target Start/End: Original strand, 5047989 - 5048167
Alignment:
Q  22 ctagaatattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagcct--------ttgggatgtaatatca 113  Q
    ||||| |||||||||| || |||||| |||| ||||||||||||| ||||||||| ||||||||||||||||||||        ||  |||| ||| |||    
T  5047989 ctagattattctagttttaaaaacatctacaagcacctataaatatacttatatgagtgcaattgtattcaagcctttaagccattaagatgcaatgtca 5048088  T
Q  114 ataatattgaaggcttcaccaaattatattctctcctcctacagtgagctaattcctaatgtgtgtccttttgtccaat 192  Q
    ||||||||  ||||||||||| || |||||||||||||||||| | | ||| || | |||| |||||||||| ||||||    
T  5048089 ataatattagaggcttcaccatatcatattctctcctcctacaataaactacttaccaatgcgtgtccttttatccaat 5048167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 194
Target Start/End: Complemental strand, 5664877 - 5664748
Alignment:
Q  64 atagacttatatgggtgcaattgtattcaagcctttgggatgtaatatcaataatattgaaggcttcaccaaattatattctctcctcctacagtgagct 163  Q
    ||||||||||||||||||||||||||||||| ||||   ||  |||  |||||||||||| |||||| |   || |||||||||||||||||| | |  |    
T  5664877 atagacttatatgggtgcaattgtattcaag-cttttaaatacaatgacaataatattgagggcttccctgtatcatattctctcctcctacaataaatt 5664779  T
Q  164 aattcctaatgtgtgtccttttgtccaatgc 194  Q
    |||| | |||||||| | | |||||||||||    
T  5664778 aattaccaatgtgtgccttcttgtccaatgc 5664748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 15063192 - 15063237
Alignment:
Q  111 tcaataatattgaaggcttcaccaaattatattctctcctcctaca 156  Q
    |||||||||||||||||||||||| || |||||||| |||||||||    
T  15063192 tcaataatattgaaggcttcaccatatcatattctcacctcctaca 15063237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 5663840 - 5663780
Alignment:
Q  30 ttctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtatt 90  Q
    |||||||| ||||||||| | ||  ||| |||||||||| |||||||||||| ||||||||    
T  5663840 ttctagttttagaaacatcttcaatcacttataaatagaattatatgggtgcgattgtatt 5663780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 22622474 - 22622302
Alignment:
Q  22 ctagaatattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagcctttgggatgtaatatcaataatatt 121  Q
    ||||| ||||||| |||||||||||| | ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||  || |||||||||||    
T  22622474 ctagattattctaattctagaaacatcttcaggcacttataaataggcttatatgggtgcaattgtattcaagcctttgagatgccatgtcaataatatt 22622375  T
Q  122 gaaggcttcaccaaattatattctctcctcctacagtgagctaattcctaatgtgtgtccttttgtccaatgc 194  Q
    | |||| | ||||  | ||||||| |||||||| | ||||||||||   ||| |||||||| |||||||||||    
T  22622374 gtaggcattaccatttcatattctttcctcctagaatgagctaatttacaatatgtgtcctcttgtccaatgc 22622302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 33 - 193
Target Start/End: Original strand, 12738201 - 12738369
Alignment:
Q  33 tagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagcc--------tttgggatgtaatatcaataatattgaa 124  Q
    ||||||||||||||| |||| ||||||||||||| |||||| ||||||||||||||||||||||        |||| |||| ||| | ||||||||||||    
T  12738201 tagttctagaaacatctacaagcacctataaataaacttatttgggtgcaattgtattcaagcctttaagcttttgagatgcaatctaaataatattgaa 12738300  T
Q  125 ggcttcaccaaattatattctctcctcctacagtgagctaattcctaatgtgtgtccttttgtccaatg 193  Q
    ||||||||||||| ||||||||| |||||||| |||||| ||| || ||| ||||||| |||| |||||    
T  12738301 ggcttcaccaaatcatattctcttctcctacaatgagcttattactgatgcgtgtcctcttgtgcaatg 12738369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 193
Target Start/End: Original strand, 12739341 - 12739523
Alignment:
Q  22 ctagaatattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattc--------aagcctttgggatgtaatatca 113  Q
    ||||| |||| ||||||||||||||| |||| ||| ||||||||||| |||| ||| |||||||||||||        ||||||||| |||| ||| | |    
T  12739341 ctagattattttagttctagaaacatctacaagcatctataaatagaattatttggatgcaattgtattcaagcctttaagcctttgagatgcaatgtta 12739440  T
Q  114 ataatattgaaggcttcaccaaattata---ttctctcctcctacagtgagctaattcctaatgtgtgtccttttgtccaatg 193  Q
    |||||||||||||||||||||||| |||   |||||| |||||||| |||||| |||  ||||||||||||| |||| |||||    
T  12739441 ataatattgaaggcttcaccaaatcatattcttctcttctcctacaatgagcttattattaatgtgtgtcctcttgtgcaatg 12739523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 15023058 - 15023103
Alignment:
Q  22 ctagaatattctagttctagaaacatttacaggcacctataaatag 67  Q
    ||||| |||| ||||||||||||||| |||| ||||||||||||||    
T  15023058 ctagattattttagttctagaaacatctacaagcacctataaatag 15023103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 20978940 - 20978765
Alignment:
Q  23 tagaatattctagttctagaaacatttacag-gcacctataaatagacttatatgggtgcaattgtattcaagccttt--------gggatgtaatatca 113  Q
    |||| |||||||||||||||||||| ||||  | ||||||||||| |||||||||||||| ||| |||||||||||||        | |||| ||| |||    
T  20978940 tagattattctagttctagaaacatctacaaagtacctataaataaacttatatgggtgccattatattcaagcctttaaacctttgagatgcaatgtca 20978841  T
Q  114 ataatattgaaggcttcaccaaattatattctctcctcctacagtgagctaattcctaatgtgtgtccttttgtcc 189  Q
    ||||||||||||||||||||| || |||||||||||||||||| |  ||| ||  |||||||||||||| ||||||    
T  20978840 ataatattgaaggcttcaccatatcatattctctcctcctacaatatgcttatcactaatgtgtgtcctcttgtcc 20978765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 33798887 - 33798822
Alignment:
Q  78 gtgcaattgtattcaagcctttgggatgtaatatcaataatattgaaggcttcaccaaattatatt 143  Q
    ||||||||||||||||||||||| |||||||  ||||||| ||| | |||||||| | ||||||||    
T  33798887 gtgcaattgtattcaagcctttgagatgtaacgtcaataacattaagggcttcactatattatatt 33798822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 19292408 - 19292331
Alignment:
Q  56 acctataaatagacttatatgggtgcaattgtattcaagcctttgggatgtaatatc-aataatattgaaggcttcac 132  Q
    ||||||||||||||  | ||| |||||||||||||||| ||||||  |||||||  | |||||||||||| |||||||    
T  19292408 acctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaatgccaaataatattgaaagcttcac 19292331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 22056639 - 22056474
Alignment:
Q  22 ctagaatattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagcctttgggatgtaatatca-ataatat 120  Q
    ||||| ||||||||||||||||| || | || ||||||||||| ||||||| | || |||||||| ||||||||       ||| ||| ||| ||| |||    
T  22056639 ctagattattctagttctagaaatatcttcaagcacctataaagagacttaaaagg-tgcaattgcattcaagc-------atgcaatgtcagatactat 22056548  T
Q  121 tgaaggcttcaccaaattatattctctcctcctacagtgagctaattcctaatgtgtgtccttttgtccaatgc 194  Q
    |||||||||||||| |||||||||||||||| |||| |||| ||||| | ||| |||||||| |||||||||||    
T  22056547 tgaaggcttcaccatattatattctctcctcatacaatgagttaattacaaatatgtgtcctcttgtccaatgc 22056474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 22055564 - 22055420
Alignment:
Q  22 ctagaatattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagcctttgggatgtaatatcaataatatt 121  Q
    ||||| |||| ||||||||||| ||| | || |||| ||||||||||||   |||| |||||||||| ||||||||||  |||| ||| || ||||||||    
T  22055564 ctagattattttagttctagaatcatcttcaagcacttataaatagactggaatgg-tgcaattgtagtcaagcctttcagatgcaatgtcgataatatt 22055466  T
Q  122 gaaggcttcaccaaattatattctctcctcctacagtgagctaatt 167  Q
    ||||||||||||| |||||||| | ||||| ||||  |||||||||    
T  22055465 gaaggcttcaccatattatattatttcctcatacatggagctaatt 22055420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 31 - 193
Target Start/End: Complemental strand, 1275291 - 1275127
Alignment:
Q  31 tctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagcctttgggatgtaatatcaataatatt--gaaggct 128  Q
    ||||||||||||||||  | || |||||||||| || |  ||||||||||||||||||||||| | |||  |||| ||| |||||||||||   ||||||    
T  1275291 tctagttctagaaacaccttcaagcacctataagtataggtatatgggtgcaattgtattcaaacgtttaagatgcaatgtcaataatattaaaaaggct 1275192  T
Q  129 tcaccaaattatattctctcctcctacagtgagctaattcctaatgtgtgtccttttgtccaatg 193  Q
    ||||||||| || |||||| ||| |||| ||   ||| | |||||||||||||| ||||||||||    
T  1275191 tcaccaaatcatgttctcttctcatacaatgtagtaactactaatgtgtgtcctcttgtccaatg 1275127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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