View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13989_low_4 (Length: 524)

Name: NF13989_low_4
Description: NF13989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13989_low_4
NF13989_low_4
[»] chr1 (11 HSPs)
chr1 (19-516)||(40036002-40036503)
chr1 (182-356)||(7892189-7892363)
chr1 (150-355)||(38139036-38139236)
chr1 (21-108)||(40031124-40031211)
chr1 (415-479)||(50911577-50911641)
chr1 (222-281)||(32574592-32574651)
chr1 (185-276)||(45984954-45985045)
chr1 (245-354)||(43043985-43044094)
chr1 (373-474)||(7892043-7892144)
chr1 (313-354)||(43067897-43067938)
chr1 (313-354)||(43082897-43082938)
[»] chr4 (3 HSPs)
chr4 (283-357)||(19965639-19965713)
chr4 (385-444)||(19965551-19965610)
chr4 (314-355)||(4230525-4230566)
[»] chr8 (2 HSPs)
chr8 (373-444)||(4788507-4788578)
chr8 (373-453)||(4296617-4296697)


Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 19 - 516
Target Start/End: Complemental strand, 40036503 - 40036002
Alignment:
Q  19 accacaagaagccttactaattctaacaaatatctaattttagcattaatataatgaactcttaaagactgaataaaaccatagcaagacagtgatgttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40036503 accacaagaagccttactaattctaacaaatatctaattttagcattaatataatgaactcttaaagactgaataaaaccatagcaagacaatgatgttc 40036404  T
Q  119 atctatatttcctagaacaatcagagatacttgacccagcaaaaacttcaaaactttctagcaaggaataaacacacagatagatagttaatattcaaaa 218  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40036403 atctatatttcctagaacaatcagagatacttgacccaacaaaaacttcagaactttctagcaaggaataaacacacagatagatagttaatattcaaaa 40036304  T
Q  219 gataatcaccaggtccataaacttgctgcttagataatccaagtattcacactagacataatattcatagcatacaaacaaaaaagaaacggtcctgcca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40036303 gataatcaccaggtccataaacttgctgcttagataatccaagtattcacactagacataatattcatagcatacaaacaaaaaagaaacggtcctgcca 40036204  T
Q  319 ccgtcgat----ctagaagtcagttctgggaacaaaagctgcagagtaagtttactagactagaccagaaatagacatacttcggatcaaagtccatttt 414  Q
    ||||||||    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40036203 ccgtcgatctagctagaagtcagttctgggaacaaaagctgcgaagtaagtttactagactagaccagaaatagacatacttcggatcaaagtccatttt 40036104  T
Q  415 atgtaataacgacaatagacttgcctagattgataatccatcaaaattcacttcttcaatccctttctttgacttactgcctcctgcatcctgattcttc 514  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40036103 gtgtaataacgacaatagacttgcctagattgataatccgtcaaaattcacttcttcaatccctttctttgacttactgcctcctgcatcctgatccttc 40036004  T
Q  515 tc 516  Q
    ||    
T  40036003 tc 40036002  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 182 - 356
Target Start/End: Complemental strand, 7892363 - 7892189
Alignment:
Q  182 aggaataaacacacagatagatagttaatattcaaaagataatcaccaggtccataaacttgctgcttagataatccaagtattcacactagacataata 281  Q
    |||||||||||| || ||| |||||| | ||| |||||| || || |||| |   |||||| ||||||| | ||||||||||||||||||||||| ||||    
T  7892363 aggaataaacacgcaaataaatagttgacatttaaaagaaaagcagcaggcctggaaactttctgcttacaaaatccaagtattcacactagacacaata 7892264  T
Q  282 ttcatagcatacaaacaaaaaagaaacggtcctgccaccgtcgatctagaagtcagttctgggaacaaaagctgc 356  Q
     |||||||||| |||||||||||||| || |||||||||| ||||||||||| ||||||| ||||||||||||||    
T  7892263 atcatagcataaaaacaaaaaagaaatggacctgccaccgccgatctagaagccagttctaggaacaaaagctgc 7892189  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 150 - 355
Target Start/End: Complemental strand, 38139236 - 38139036
Alignment:
Q  150 tgacccagcaaaaacttcaaaactttctagcaaggaataaacacacagatagatagttaatattcaaaagataatcaccaggtccataaacttgctgctt 249  Q
    ||||||||||||||||| ||||| |   | ||||||||||||||| |  || |||||| |||||||||||| ||||| |||||||  ||| |||||||||    
T  38139236 tgacccagcaaaaactt-aaaacatcacaacaaggaataaacacaaa--taaatagttgatattcaaaagaaaatcagcaggtccggaaatttgctgctt 38139140  T
Q  250 agataatccaagtattcacactagacataatattcatagcatacaaacaaaaaagaaacggtcctgccaccgtcgatctagaagtcagttctgggaacaa 349  Q
    | | |||| |||||||||||| ||||| | || |||||||||| |||| |||||||||||| ||||||||| || ||||||||| ||||||| |||||||    
T  38139139 acaaaatc-aagtattcacacaagacacagtaatcatagcataaaaacgaaaaagaaacgg-cctgccaccatcaatctagaagccagttcttggaacaa 38139042  T
Q  350 aagctg 355  Q
    ||||||    
T  38139041 aagctg 38139036  T

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Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 40031211 - 40031124
Alignment:
Q  21 cacaagaagccttactaattctaacaaatatctaattttagcattaatataatgaactcttaaagactgaataaaaccatagcaagac 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||| ||||||| ||||    
T  40031211 cacaagaagccttactaattctaacaaatatctaattttagcattagtataatgaactcctaaaggctgaataaagccatagcgagac 40031124  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 415 - 479
Target Start/End: Original strand, 50911577 - 50911641
Alignment:
Q  415 atgtaataacgacaatagacttgcctagattgataatccatcaaaattcacttcttcaatccctt 479  Q
    |||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| ||||    
T  50911577 atgtaataacgacaatagacttccctagatagataatccagcaaaattcacttcttcaatacctt 50911641  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 32574651 - 32574592
Alignment:
Q  222 aatcaccaggtccataaacttgctgcttagataatccaagtattcacactagacataata 281  Q
    ||||| |||||||| |||||||||||||| | ||||||||||||||| ||||||| ||||    
T  32574651 aatcaacaggtccagaaacttgctgcttacaaaatccaagtattcacgctagacacaata 32574592  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 276
Target Start/End: Complemental strand, 45985045 - 45984954
Alignment:
Q  185 aataaacacacagatagatagttaatattcaaaagataatcaccaggtccataaacttgctgcttagataatccaagtattcacactagaca 276  Q
    |||||||||||| ||| | |||| |||||||||| | ||||| |||||||| ||||| ||||||   | ||||||||| |||||||||||||    
T  45985045 aataaacacacaaataaagagttgatattcaaaacaaaatcagcaggtccagaaactcgctgctagcaaaatccaagtgttcacactagaca 45984954  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 245 - 354
Target Start/End: Original strand, 43043985 - 43044094
Alignment:
Q  245 tgcttagataatccaagtattcacactagacataatattcatagcatacaaacaaaaaagaaacggtcctgccaccgtcgatctagaagtcagttctggg 344  Q
    |||||| | ||||||||| |||| |||||||| || | | | |||||| |||||||| ||| |  || ||||||||||||||||||||  |||||||| |    
T  43043985 tgcttacaaaatccaagtgttcagactagacacaacaattaaagcataaaaacaaaacagatatagtactgccaccgtcgatctagaacccagttctgag 43044084  T
Q  345 aacaaaagct 354  Q
    |||| |||||    
T  43044085 aacacaagct 43044094  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 474
Target Start/End: Complemental strand, 7892144 - 7892043
Alignment:
Q  373 actagaccagaaatagacatacttcggatcaaagtccattttatgtaataacgacaatagacttgcctagattgataatccatcaaaattcacttcttca 472  Q
    ||||||| | |||||||||| ||  ||||||| | ||||||  |||||||| |||||||||||| ||||||| ||| |||   ||| |||||||| ||||    
T  7892144 actagacgacaaatagacatcctatggatcaaggaccatttattgtaataaagacaatagacttccctagatagatcatcttgcaagattcactttttca 7892045  T
Q  473 at 474  Q
    ||    
T  7892044 at 7892043  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 43067938 - 43067897
Alignment:
Q  313 ctgccaccgtcgatctagaagtcagttctgggaacaaaagct 354  Q
    ||||||||||||||||||||  |||||||| |||||||||||    
T  43067938 ctgccaccgtcgatctagaacccagttctgagaacaaaagct 43067897  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 43082897 - 43082938
Alignment:
Q  313 ctgccaccgtcgatctagaagtcagttctgggaacaaaagct 354  Q
    ||||||||||||||||||||  |||||||| |||||||||||    
T  43082897 ctgccaccgtcgatctagaacccagttctgagaacaaaagct 43082938  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 357
Target Start/End: Complemental strand, 19965713 - 19965639
Alignment:
Q  283 tcatagcatacaaacaaaaaagaaacggtcctgccaccgtcgatctagaagtcagttctgggaacaaaagctgca 357  Q
    |||||||||| |||| ||||||||| || |||||||| ||||||||||||| ||||||||||||| |||||||||    
T  19965713 tcatagcataaaaaccaaaaagaaatggccctgccactgtcgatctagaagccagttctgggaacgaaagctgca 19965639  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 19965610 - 19965551
Alignment:
Q  385 atagacatacttcggatcaaagtccattttatgtaataacgacaatagacttgcctagat 444  Q
    ||||||||||| |||||||||  ||||||  ||||||||||||||||||||| |||||||    
T  19965610 atagacatactgcggatcaaataccatttattgtaataacgacaatagactttcctagat 19965551  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 355
Target Start/End: Original strand, 4230525 - 4230566
Alignment:
Q  314 tgccaccgtcgatctagaagtcagttctgggaacaaaagctg 355  Q
    |||||||||||||||||||  |||||||||||||||||||||    
T  4230525 tgccaccgtcgatctagaacccagttctgggaacaaaagctg 4230566  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 444
Target Start/End: Complemental strand, 4788578 - 4788507
Alignment:
Q  373 actagaccagaaatagacatacttcggatcaaagtccattttatgtaataacgacaatagacttgcctagat 444  Q
    ||||||| ||||||||||||||| ||||| |||| ||||||  ||||||| ||||||||||||| |||||||    
T  4788578 actagacgagaaatagacatactacggatgaaagaccatttattgtaatagcgacaatagacttccctagat 4788507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 453
Target Start/End: Original strand, 4296617 - 4296697
Alignment:
Q  373 actagaccagaaatagacatacttcggatcaaagtccattttatgtaataacgacaatagacttgcctagattgataatcc 453  Q
    ||||||| ||||||||||||||| | ||| |||| ||||||  || |||||||||||||||||| ||||||| ||| ||||    
T  4296617 actagacgagaaatagacatactacagatgaaagaccatttattgcaataacgacaatagacttccctagatagatcatcc 4296697  T

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