View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13989_low_6 (Length: 423)
Name: NF13989_low_6
Description: NF13989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13989_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 50 - 290
Target Start/End: Complemental strand, 43775014 - 43774766
Alignment:
| Q |
50 |
tattcttatccgccacccaaacatacgggaacttaaagccgtaggcagagttgcttcgacatataaagacaaatgaaggaaaacagatgtttggacatga |
149 |
Q |
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| T |
43775014 |
tattcttatccaccacccaaacatacaggaatttaaagccgtaggcggagttgcttcgacatataaagacaaatagaggaaagcagatgttcggacatga |
43774915 |
T |
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| Q |
150 |
gatcaagttatcaaaattgaagaatataaagtataaagt----------ccaatgatatatcacatacagacatggtggcaagccacaggggaaaaacaa |
239 |
Q |
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| T |
43774914 |
gatcatgttatcaaaattgaaggatataaagtataaagtccaactccaaccaatgatatattacatacagacatggtagcaag--acacgggaaaaacaa |
43774817 |
T |
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| Q |
240 |
catcaataacgctatgctaattgagcagtgtcatgtcattcttaccaaact |
290 |
Q |
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| T |
43774816 |
cattaataaagctgtgctaattgggcagtgccatgtcattgttaccaaact |
43774766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 291 - 423
Target Start/End: Complemental strand, 43774617 - 43774479
Alignment:
| Q |
291 |
tttgcgagcatattcacgaggaagttagacaagattgggttagtat------gatagcaagacaataatccatgacaaaatggaatacaaagacagcaag |
384 |
Q |
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| T |
43774617 |
tttgcgagcatgttcacgaggaagtaagacaagactgggttagtattactatgataacaagacaataatccatgacaaaatggaaaacaaagacagcaag |
43774518 |
T |
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| Q |
385 |
tctcaagatctccataaatgaaattactaataagacatt |
423 |
Q |
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| T |
43774517 |
actcaagatctccataaattaaattactaataagacatt |
43774479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 43775089 - 43775041
Alignment:
| Q |
1 |
tcatattttattaccatctagtaaaaccagttaaataacatgcatcagat |
50 |
Q |
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| T |
43775089 |
tcatattttataaccatctagtaaaa-caattaaataacatgcatcagat |
43775041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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