View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13989_low_8 (Length: 395)
Name: NF13989_low_8
Description: NF13989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13989_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 4888597 - 4888296
Alignment:
| Q |
18 |
attagcatgcacattccacatgtgcttcttgtcttttaacatcaagagttagtattaagttgaagaagtacattgtttttaattcaaaaatattcatgta |
117 |
Q |
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| T |
4888597 |
attagcatgcacattccacatgtgcttcttgtcttttaacatcaagagttagtattaagttgaagaagtacattgtttttaattcaaaaatattcatgta |
4888498 |
T |
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| Q |
118 |
gcaacaatattattattgcattgaatataaccctatttataaagcctttttcacatttttaaatgagacaatgagtccttcaaaaacaaattttaggttg |
217 |
Q |
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| T |
4888497 |
gcaacaatattattattgcattgaatataaccctatttataaagcctttttcacatttttaaatgagacaatgagtccttcaaaaacaaattttaggttg |
4888398 |
T |
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| Q |
218 |
aagaaatatattgtttttaatttannnnnnnngcaacatggctacacaatatttgttcttttctaaaaacaaaatcaaccttaggggaggtgaagggaga |
317 |
Q |
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| T |
4888397 |
aagaaatatattgtttttaattt--tttttttgcaacatggctacacaatatttgttcttttctaaaaacaaaatcaaccttaggggaggtgaagggaga |
4888300 |
T |
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| Q |
318 |
ttga |
321 |
Q |
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|||| |
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| T |
4888299 |
ttga |
4888296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 328 - 388
Target Start/End: Complemental strand, 4888151 - 4888091
Alignment:
| Q |
328 |
aatcatgccctacatttgtgttcgtttaataaaacacaaatgtatttgatttcctttgctt |
388 |
Q |
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| T |
4888151 |
aatcatgccctacatttgtgttcatttaataaaacgcaaatgtatttgatttcttttgctt |
4888091 |
T |
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