View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1398_high_10 (Length: 269)
Name: NF1398_high_10
Description: NF1398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1398_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 243
Target Start/End: Complemental strand, 18070458 - 18070245
Alignment:
| Q |
30 |
cacagaacaaaaaaccacattcatctatttcagcacactgatatgacataattttcattcaaatcaagctccatcatatagataacactttatttcatcc |
129 |
Q |
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| T |
18070458 |
cacacaacaaaaaaccacattcatctatttcagcacactgatatgacataattttcattcaaatcaagctccatcatatagataacactttatttcatcc |
18070359 |
T |
|
| Q |
130 |
accattccttcaaccttattaacccgattgttgtaaatcctatcatttcttgacctccaaattacctaaatgacaacatgtcaaattaaccactgcccct |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18070358 |
accattccttcaaccttattaacccgattgttgtaaatcctatcatttcttgacctccaaattacctaaatgacaacatgtcaaattaaccactgcccct |
18070259 |
T |
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| Q |
230 |
ttttaatctctgct |
243 |
Q |
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|||||||||||||| |
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| T |
18070258 |
ttttaatctctgct |
18070245 |
T |
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