View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1398_high_11 (Length: 263)

Name: NF1398_high_11
Description: NF1398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1398_high_11
NF1398_high_11
[»] chr3 (13 HSPs)
chr3 (30-263)||(5296950-5297183)
chr3 (153-262)||(6898416-6898525)
chr3 (153-263)||(6592944-6593054)
chr3 (142-263)||(6723670-6723791)
chr3 (170-263)||(6236070-6236163)
chr3 (142-263)||(6243634-6243755)
chr3 (170-263)||(8570549-8570642)
chr3 (153-261)||(6880844-6880952)
chr3 (154-262)||(7748331-7748439)
chr3 (153-263)||(6140614-6140724)
chr3 (153-261)||(6915429-6915537)
chr3 (170-263)||(8469902-8469995)
chr3 (169-229)||(5279009-5279069)
[»] scaffold0958 (1 HSPs)
scaffold0958 (170-263)||(1387-1479)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 30 - 263
Target Start/End: Original strand, 5296950 - 5297183
Alignment:
Q  30 acaactacggaaattccaagaattccatcctggatacgtaccattgaagtcgtcaacaaacaaattttcaagaacggtattgttgagtagaattagctcc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5296950 acaactacggaaattccaagaattccatcctggatacgtaccattgaagtcgtcaacaaacaaattttcaagaacggtattgttgagtagaattagctcc 5297049  T
Q  130 aaggaagactcgatgatccgagatccacaaaggatgacatttttcaaggtggatggcaattcatttaccaaaatgttttcacatccttttagctctagct 229  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5297050 aaggaagactcgatgatcccagatccacaaaggatgacatttttcaaggtggatggcaattcatttaccaaaatgttttcacatccttttagctctagct 5297149  T
Q  230 caacaatattatcagccttgggaatcgaagcctc 263  Q
    ||||||||||||||||||||||||||||||||||    
T  5297150 caacaatattatcagccttgggaatcgaagcctc 5297183  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 153 - 262
Target Start/End: Original strand, 6898416 - 6898525
Alignment:
Q  153 tccacaaaggatgacatttttcaaggtggatggcaattcatttaccaaaatgttttcacatccttttagctctagctcaacaatattatcagccttggga 252  Q
    ||||||||||||| | ||||||||| |||||||||||||||||| |||||||   |||||||  ||||| |||||||||   ||||||||||||||||||    
T  6898416 tccacaaaggatggcctttttcaagctggatggcaattcatttatcaaaatgccatcacatctctttagttctagctcactgatattatcagccttggga 6898515  T
Q  253 atcgaagcct 262  Q
    || |||||||    
T  6898516 attgaagcct 6898525  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 153 - 263
Target Start/End: Complemental strand, 6593054 - 6592944
Alignment:
Q  153 tccacaaaggatgacatttttcaaggtggatggcaattcatttaccaaaatgttttcacatccttttagctctagctcaacaatattatcagccttggga 252  Q
    |||||||||||||||  |||||||| |||||||  ||||||||| ||||||||  |||||||  || || |||||||||   ||||||||||||||||||    
T  6593054 tccacaaaggatgacccttttcaagctggatggatattcatttatcaaaatgtcatcacatctcttcagttctagctcagtgatattatcagccttggga 6592955  T
Q  253 atcgaagcctc 263  Q
    || ||||||||    
T  6592954 attgaagcctc 6592944  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 263
Target Start/End: Complemental strand, 6723791 - 6723670
Alignment:
Q  142 atgatccgagatccacaaaggatgacatttttcaaggtggatggcaattcatttaccaaaatgttttcacatccttttagctctagctcaacaatattat 241  Q
    ||||| |||| ||||| |||||||||  |||||||||| || ||||||||||||| |||||| |  |||||||  ||||| ||||||| |   |||||||    
T  6723791 atgatgcgagttccaccaaggatgaccgttttcaaggtagagggcaattcatttatcaaaatatcatcacatctctttagttctagcttactgatattat 6723692  T
Q  242 cagccttgggaatcgaagcctc 263  Q
    ||||||||||||| ||||||||    
T  6723691 cagccttgggaattgaagcctc 6723670  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 6236070 - 6236163
Alignment:
Q  170 ttttcaaggtggatggcaattcatttaccaaaatgttttcacatccttttagctctagctcaacaatattatcagccttgggaatcgaagcctc 263  Q
    ||||||||||||||||||||||||||| |||||||   |||||||  ||||| |||||||||   |||||| ||||||||||||| || |||||    
T  6236070 ttttcaaggtggatggcaattcatttatcaaaatgccatcacatctctttagttctagctcactgatattaccagccttgggaattgacgcctc 6236163  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 263
Target Start/End: Original strand, 6243634 - 6243755
Alignment:
Q  142 atgatccgagatccacaaaggatgacatttttcaaggtggatggcaattcatttaccaaaatgttttcacatccttttagctctagctcaacaatattat 241  Q
    |||||| ||| ||||||||||||||| ||||||||| |||||| ||||| ||||| |||||||   |||||||  ||||| ||||||| ||  |||||||    
T  6243634 atgatctgagttccacaaaggatgacctttttcaagttggatgacaatttatttatcaaaatgccatcacatctctttagttctagctgaatgatattat 6243733  T
Q  242 cagccttgggaatcgaagcctc 263  Q
     |||  ||||||| ||||||||    
T  6243734 aagcaatgggaattgaagcctc 6243755  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 8570642 - 8570549
Alignment:
Q  170 ttttcaaggtggatggcaattcatttaccaaaatgttttcacatccttttagctctagctcaacaatattatcagccttgggaatcgaagcctc 263  Q
    |||||||| |||||||||||||||||||||||||| | |||||| | | ||| | || |||  | |||||||||||||||||||| ||||||||    
T  8570642 ttttcaagctggatggcaattcatttaccaaaatgctatcacattcatctagatataactcttcgatattatcagccttgggaattgaagcctc 8570549  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 6880844 - 6880952
Alignment:
Q  153 tccacaaaggatgacatttttcaaggtggatggcaattcatttaccaaaatgttttcacatccttttagctctagctcaacaatattatcagccttggga 252  Q
    ||||||||||||||   |||||||  | |||||||||||||||| ||||||||  |||||||  ||||| |||||||||   |||||| |||||||||||    
T  6880844 tccacaaaggatgattcttttcaatttagatggcaattcatttatcaaaatgtcatcacatctctttagttctagctcagtgatattagcagccttggga 6880943  T
Q  253 atcgaagcc 261  Q
    || ||||||    
T  6880944 attgaagcc 6880952  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 262
Target Start/End: Original strand, 7748331 - 7748439
Alignment:
Q  154 ccacaaaggatgacatttttcaaggtggatggcaattcatttaccaaaatgttttcacatccttttagctctagctcaacaatattatcagccttgggaa 253  Q
    ||||||||||||||  |||||||| | ||||||||||||||||  ||||||   |||||||  ||||| ||||| |||   |||||||||||||||||||    
T  7748331 ccacaaaggatgacccttttcaagctagatggcaattcatttattaaaatgccatcacatctctttagttctaggtcactgatattatcagccttgggaa 7748430  T
Q  254 tcgaagcct 262  Q
    | |||||||    
T  7748431 ttgaagcct 7748439  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 263
Target Start/End: Original strand, 6140614 - 6140724
Alignment:
Q  153 tccacaaaggatgacatttttcaaggtggatggcaattcatttaccaaaatgttttcacatccttttagctctagctcaacaatattatcagccttggga 252  Q
    ||||||||||||| |  |||||||| | |||||||||||||||| |||||||   |||||||  ||||| ||||  |||   |||||| |||||||||||    
T  6140614 tccacaaaggatggcccttttcaagcttgatggcaattcatttatcaaaatgccatcacatctctttagttctatatcactgatattagcagccttggga 6140713  T
Q  253 atcgaagcctc 263  Q
    || ||||||||    
T  6140714 attgaagcctc 6140724  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 6915429 - 6915537
Alignment:
Q  153 tccacaaaggatgacatttttcaaggtggatggcaattcatttaccaaaatgttttcacatccttttagctctagctcaacaatattatcagccttggga 252  Q
    |||||||||||||||  |||||||||| | |||||| ||||||| ||| ||||  |||||||  ||||| |||||||||   |||||| ||||| | |||    
T  6915429 tccacaaaggatgactcttttcaaggtagctggcaactcatttatcaatatgtcatcacatctctttagttctagctcactgatattagcagccatcgga 6915528  T
Q  253 atcgaagcc 261  Q
    || ||||||    
T  6915529 attgaagcc 6915537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 8469902 - 8469995
Alignment:
Q  170 ttttcaaggtggatggcaattcatttaccaaaatgttttcacatccttttagctctagctcaacaatattatcagccttgggaatcgaagcctc 263  Q
    |||||||| ||| ||||||||||||||  |||||||  |||||||  | ||| |||| ||| |  ||||||||| ||||||||||||| |||||    
T  8469902 ttttcaagctggttggcaattcatttattaaaatgtgatcacatctctgtagatctaactctatgatattatcacccttgggaatcgatgcctc 8469995  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 5279009 - 5279069
Alignment:
Q  169 tttttcaaggtggatggcaattcatttaccaaaatgttttcacatccttttagctctagct 229  Q
    ||||||||| ||| ||||||||||||||  |||| |||| ||||||| | |||||||||||    
T  5279009 tttttcaagttggttggcaattcatttatgaaaacgtttacacatccgtgtagctctagct 5279069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0958 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 1479 - 1387
Alignment:
Q  170 ttttcaaggtggatggcaattcatttaccaaaatgttttcacatccttttagctctagctcaacaatattatcagccttgggaatcgaagcctc 263  Q
    |||||||| |||| || |||||||||||||||||| | |||||||| ||||| ||||||||    |||||||||||||| ||||| ||| ||||    
T  1479 ttttcaagttggaaggaaattcatttaccaaaatgctatcacatccgtttag-tctagctctctgatattatcagccttaggaattgaaacctc 1387  T

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