View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1398_high_2 (Length: 421)
Name: NF1398_high_2
Description: NF1398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1398_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 28 - 410
Target Start/End: Original strand, 33422624 - 33423006
Alignment:
| Q |
28 |
cacatggctacaggactacaagtgggccaaaaccatattcaaagccattatctaaaccgacaaaagacaagtgacaatgctttcatgagtagtaattaaa |
127 |
Q |
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| T |
33422624 |
cacatggctacaggactacaagtgggccaaaaccatattcaaagccattatctaaaccgacaaaagacaagtgacaatgctttcatgagtagtaattaaa |
33422723 |
T |
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| Q |
128 |
tctttacactttgtgacaagtgatttgcagattaggtaattaacctttacactttgtgaattcatttcactcataaccaagatttaattgtatggttatt |
227 |
Q |
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| T |
33422724 |
tctttacactttgtgacaagtgatttgcagattaggtaattaacctttacactttgtgaattcatttcactcataaccaagatttaattgtatggttatt |
33422823 |
T |
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| Q |
228 |
agaattatcacataataaaacaaagcaagaaaaagataataacaatttaaaaagagggtaagatatcactaaatatataccagcatgaagaacatcagct |
327 |
Q |
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| T |
33422824 |
agaattatcacataataaatcaaagcaagaaaaagataataacaatttaagaagagggtaagatatcactaaatatataccagcatgaagaacatcagct |
33422923 |
T |
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| Q |
328 |
acagcatcctctgctgattttgcatacccttgctcatcatgtatgatcccaacagctccacaatctgacacaatatacctgat |
410 |
Q |
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| T |
33422924 |
acagcatcctctgctgattttgcatacccttgctcatcatgtatgatcccaacagctccacaatctgacacaatatacctgat |
33423006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 410
Target Start/End: Original strand, 25926710 - 25926817
Alignment:
| Q |
303 |
tataccagcatgaagaacatcagctacagcatcctctgctgattttgcatacccttgctcatcatgtatgatcccaacagctccacaatctgacacaata |
402 |
Q |
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| T |
25926710 |
tataccagcttgaagtacatcggctacagcatcctctggtgtttttgcataaccttgattatcatatatgattcgtactgcttcacaatccgacgtaata |
25926809 |
T |
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| Q |
403 |
tacctgat |
410 |
Q |
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|||||||| |
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| T |
25926810 |
tacctgat |
25926817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 374
Target Start/End: Complemental strand, 25958421 - 25958352
Alignment:
| Q |
305 |
taccagcatgaagaacatcagctacagcatcctctgctgattttgcatacccttgctcatcatgtatgat |
374 |
Q |
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||||||| ||||| ||||| |||||||||||||||| || ||||||||| |||||| |||||||||||| |
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| T |
25958421 |
taccagcttgaagtacatctgctacagcatcctctggtgcttttgcataaccttgcctatcatgtatgat |
25958352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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