View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1398_high_6 (Length: 298)
Name: NF1398_high_6
Description: NF1398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1398_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 22131873 - 22131623
Alignment:
| Q |
8 |
agaaggtattcaaactgtatttactattattgacttaaggataggtttgtattatttgcttgttgccttagtggcaacaacgatagcgtttagtgcagct |
107 |
Q |
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| T |
22131873 |
agaaggtattcgaactgtatttactatta---acttaaggataggtttgtattatttgcttgttgccttagtggcaacaacgatagcgtttagtgcagct |
22131777 |
T |
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| Q |
108 |
ctgtctatgcttctagagaagagatttaaattttctataatttatatttctttatttgcttattttccaattacttatgctacaaagcttcgatatccta |
207 |
Q |
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| T |
22131776 |
ctgtctatgcttctagagaagagatttaaattttctataatttatatttctttatttgcttattttccaattacttatgctacaagtcttcgatatccta |
22131677 |
T |
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| Q |
208 |
atttgaggagaataaagctcttgtaatctatagcagcatttgtctgaatcaagt |
261 |
Q |
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| T |
22131676 |
aattgaggagaataaagctcttgtaatctatagcagcatttgtctgaatcaagt |
22131623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 51 - 261
Target Start/End: Complemental strand, 21961163 - 21960953
Alignment:
| Q |
51 |
ggtttgtattatttgcttgttgccttagtggcaacaacgatagcgtttagtgcagctctgtctatgcttctagagaagagatttaaattttctataattt |
150 |
Q |
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| T |
21961163 |
ggtttgtattttttgctttttgccttagtggcaacaacgatagcctttactgcagctctgtctatgcttctagagaagagatttaaattttctataattt |
21961064 |
T |
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| Q |
151 |
atatttctttatttgcttattttccaattacttatgctacaaagcttcgatatcctaatttgaggagaataaagctcttgtaatctatagcagcatttgt |
250 |
Q |
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| T |
21961063 |
ctatttctatatttgcttgtattccaattatttatgctaccggtcttcgatatcctaatttgaggagaataaagctcttgtaatctataccagcatttgt |
21960964 |
T |
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| Q |
251 |
ctgaatcaagt |
261 |
Q |
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| T |
21960963 |
ctgaatcaagt |
21960953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 51 - 258
Target Start/End: Original strand, 18948970 - 18949177
Alignment:
| Q |
51 |
ggtttgtattatttgcttgttgccttagtggcaacaacgatagcgtttagtgcagctctgtctatgcttctagagaagagatttaaattttctataattt |
150 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18948970 |
ggtttgtattatttgcttattgccttagtggcaacaacgatagcgtttgctgcagctctgtctatgcttctagagaagagatttaaattttctatagttt |
18949069 |
T |
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| Q |
151 |
atatttctttatttgcttattttccaattacttatgctacaaagcttcgatatcctaatttgaggagaataaagctcttgtaatctatagcagcatttgt |
250 |
Q |
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| T |
18949070 |
atatttcttctcttgcttgtcttccacttcattatgctacaagtgttctatatcctaatttgaggagaataaagctcttgcaatctatcgcagcatttgt |
18949169 |
T |
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| Q |
251 |
ctgaatca |
258 |
Q |
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|||||||| |
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| T |
18949170 |
ctgaatca |
18949177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 291
Target Start/End: Original strand, 18949226 - 18949256
Alignment:
| Q |
261 |
tttatattgtagttttttactcttcatctca |
291 |
Q |
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| T |
18949226 |
tttatattgtagttttttactcttcatctca |
18949256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 291
Target Start/End: Complemental strand, 22131584 - 22131554
Alignment:
| Q |
261 |
tttatattgtagttttttactcttcatctca |
291 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
22131584 |
tttatattgtagttttttactcttcatctca |
22131554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 291
Target Start/End: Complemental strand, 21960898 - 21960870
Alignment:
| Q |
263 |
tatattgtagttttttactcttcatctca |
291 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
21960898 |
tatattgtagttttttactcttcatctca |
21960870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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