View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1398_low_1 (Length: 654)
Name: NF1398_low_1
Description: NF1398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1398_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 30 - 627
Target Start/End: Complemental strand, 45074160 - 45073562
Alignment:
| Q |
30 |
cattctctctgaattcaagaaagaaaatggcctctctatcaaacctcaactaacttctccacataaacacacttccagtaacctctctcaactccacacc |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45074160 |
cattctctctgaattcaagaaagaaaatggcctctctatcaaacctcaactaacttctccacataaacacacttccagtaacctctctcaactccacacc |
45074061 |
T |
|
| Q |
130 |
ttcaatttctccattgaccatcacattcggttttctgagcaaacatgccagaagaccgattgtgttggccgatggttttaggcggatggcgtgtgttcaa |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45074060 |
ttcaatttctccattgaccatcacattcggttttctgagcaaacatgccagaagaccgattgtgttggccgatggttttaggcggatggcgtatgttcaa |
45073961 |
T |
|
| Q |
230 |
gagaatgcgaatgatgatgagtggggttcagagccttctgccgatgtggcagttgcggaggtgatagtgacagatattgagacagagaagctaaagaagg |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
45073960 |
gagaatgcgaatgatgatgagtggggttcagagccttctgccgatgtggcagttgcggaggtgatagtgacagatattgagacggagaagctgaagaagg |
45073861 |
T |
|
| Q |
330 |
acttggttggtttgttttatgggactgatcatggattgaaagccgcgagtgagacaagagcggagatttttgagcttattagtcagctcgaggctaagtt |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45073860 |
acttggttggtttgttttatgggactgatcatggatcgaaagccgcgagtgagacaagagcggagatttttgagcttattagtcagctcgaggctaagtt |
45073761 |
T |
|
| Q |
430 |
tcccacccctgcttccactgatgccttgagtttgctcgatggaaaatggattctcgcgtaagcaaattcgttttactaactttcattttttgttaacaag |
529 |
Q |
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| T |
45073760 |
tcccacccctgcttccactgatgccttgagtttgctcgatggaaaatggattctcgcgtaagcaaattcgttttactaactttcatcttttgttaacaag |
45073661 |
T |
|
| Q |
530 |
ttgttttactatttgatttgattctagtgtgttgtagttattaatt-ttttgttagacaatgatttgtgtttggaagggaacttatcatgttctgctta |
627 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45073660 |
ttgttttactatttgatttgattctagtgtgttttagttattaatttttttgttagacaatgatttgtgtttggaagggaacttatcatgttctgctta |
45073562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 31 - 627
Target Start/End: Complemental strand, 8881029 - 8880422
Alignment:
| Q |
31 |
attctctctgaattcaagaaagaaaatggcctctctatcaaacctcaactaacttctccacataaacacacttccagtaacctctctcaactccacacct |
130 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8881029 |
attctctcttaattcaagaaagaaaatggcctctctctcaaacctcaaccaacttctccacataaacacacttccagtaacctctctcaactccacacct |
8880930 |
T |
|
| Q |
131 |
tcaatttctccattgaccatcacattcggttttctgagcaaacatgccagaagaccgattgtgttggccgatggttttaggcggatggcgtgtgttcaag |
230 |
Q |
| |
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|||||| |||||| |||||||||||||||||| | ||| ||| ||||||||| | ||||| || ||||||||||||| |||||| ||| || ||||| | |
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|
| T |
8880929 |
tcaattactccatcgaccatcacattcggtttacagagtaaaaatgccagaaaatcgattttggtggccgatggtttgaggcgggtggtgtatgttcggg |
8880830 |
T |
|
| Q |
231 |
agaatgcgaatgatgatga---------gtggggttcagagccttctgccgatgtggcagttgcggaggtgatagtgacagatattgagacagagaagct |
321 |
Q |
| |
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| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| |||||||| |
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| T |
8880829 |
ctactgcaaatgatgatgatgatgatgagtggggttcagagccttctgccgatgtggcagttgcggaggtgatagtgccagaaagtgagacggagaagct |
8880730 |
T |
|
| Q |
322 |
aaagaaggacttggttggtttgttttatgggactgatcatggattgaaagccgcgagtgagacaagagcggagatttttgagcttattagtcagctcgag |
421 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8880729 |
gaagaaggacttggttggttccttttatgggactgctcgtggattgaaagcggcgagtgagacaagagcggagatttttgagcttattagtcagctcgag |
8880630 |
T |
|
| Q |
422 |
gctaagtttcccacccctgcttccactgatgccttgagtttgctcgatggaaaatggattctcgcgtaagcaaattcgttttactaactttcattttttg |
521 |
Q |
| |
|
|||||| ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8880629 |
gctaagaatccaacccccgcttccactgatgctttgagtttgctcgatggaaaatggattcttgcgtaagcaaattcgttttactaactttcattttttg |
8880530 |
T |
|
| Q |
522 |
ttaacaagttgttttactatttgatttgattctagtgtgttgtagttattaatttt---ttgttagacaatgatttgtgtttggaagggaacttatcatg |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| || |||| |
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| T |
8880529 |
ttaacaagttgttttactatttgatttgattctagtgtgttttagttattaattttttattgttagacaatgatttgtgtttggaagggaa-ttctcata |
8880431 |
T |
|
| Q |
619 |
ttctgctta |
627 |
Q |
| |
|
||||||||| |
|
|
| T |
8880430 |
ttctgctta |
8880422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 30 - 491
Target Start/End: Complemental strand, 8885136 - 8884662
Alignment:
| Q |
30 |
cattctctctgaattcaag-aaagaaaatggcctctctatcaaacctcaactaacttctccacataaacacacttccagtaacctctctcaactccacac |
128 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||| ||| |||||||||| | |||||| |||||||||||||||||||||||||||| |
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| T |
8885136 |
cattctctctgaattcaactaaaaaaaatggcctctctatcaaacctaaaccaacttctccatacaaacactcttccagtaacctctctcaactccacac |
8885037 |
T |
|
| Q |
129 |
cttcaatttctccattgaccatcacattcggttttctgagcaaacatgccagaagaccgattgtgttggccgatggttttaggcggatggcgtgtgttca |
228 |
Q |
| |
|
||||||||||||| | |||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||| |||||| ||| || |||||| |
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|
| T |
8885036 |
cttcaatttctccgtcgaccatcacagtcggttttctgaacaaacatgtcagaaaaccgattgtgttggccgatggtttgaggcgggtggtgtatgttca |
8884937 |
T |
|
| Q |
229 |
agagaatgcgaat-gatgatgagtggggttcagagccttctgccgatgtggcagttgcggaggt------------gatagtgacagatattgagacaga |
315 |
Q |
| |
|
| ||| |||| ||||||||||||||| ||||||||||||| | ||| || ||||||||||| || |||| | ||| |||||| || |
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|
| T |
8884936 |
ggctaat-agaatcgatgatgagtggggtccagagccttctgctggtgtcgcggttgcggaggtgcaagcaactgagaaagtgtcggatggtgagacgga |
8884838 |
T |
|
| Q |
316 |
gaagctaaagaaggacttggttggtttgttttatgggactgatcatggattgaaagccgcgagtgagacaagagcggagatttttgagcttattagtcag |
415 |
Q |
| |
|
|||||| ||||||| |||||||||| ||||||||||||||||| |||||||||||| ||||||| || ||||| |||||| |||||||||||| |||| |
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|
| T |
8884837 |
gaagctgaagaaggcgttggttggttcgttttatgggactgatcgtggattgaaagcgacgagtgaaactagagctgagattgttgagcttattactcag |
8884738 |
T |
|
| Q |
416 |
ctcgaggctaagtttcccacccctgcttccactgatgccttgagtttgctcgatggaaaatggattctcgcgtaag |
491 |
Q |
| |
|
|| || |||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
8884737 |
ctggaagctaagaatcccacacctgcttccactgatgccttgagtttgctcaatggaaaatggattcttgcgtaag |
8884662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 2e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 30 - 192
Target Start/End: Complemental strand, 4341849 - 4341687
Alignment:
| Q |
30 |
cattctctctgaattcaagaaagaaaatggcctctctatcaaacctcaactaacttctccacataaacacacttccagtaacctctctcaactccacacc |
129 |
Q |
| |
|
|||||||| | ||||||| |||||||||||||||||| |||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||| | |
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|
| T |
4341849 |
cattctcttttaattcaacaaagaaaatggcctctctctcaaacctcaaccaacttctccacacaaacacccttccagtaacctctctcaactccacaac |
4341750 |
T |
|
| Q |
130 |
ttcaatttctccattgaccatcacattcggttttctgagcaaacatgccagaagaccgattgt |
192 |
Q |
| |
|
||||||||||||| |||||||| | ||| |||||||||||||||||| || |||| |||||| |
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|
| T |
4341749 |
ttcaatttctccaccgaccatcagagtcgattttctgagcaaacatgcaaggagacagattgt |
4341687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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