View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1398_low_11 (Length: 356)
Name: NF1398_low_11
Description: NF1398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1398_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 29 - 344
Target Start/End: Original strand, 46213899 - 46214214
Alignment:
| Q |
29 |
aataactaatataagagattctctttatacacatgagttcatatgaaaatgaagaagatgacaagaataactaacttacaaactcttaactaactattag |
128 |
Q |
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| T |
46213899 |
aataactaatataagagattctctttatacacatgagttcatatgaaaatgaagaagatgacaagaataactaacttacaaactcttaactaactattag |
46213998 |
T |
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| Q |
129 |
ctaaatttatctctaatttcccatgcaagctggaagatatgtttagtacaattccagattggaaaatttaaaaaagaatatgaacatagttttaccacca |
228 |
Q |
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| T |
46213999 |
ctaaatttatctctaatttcccatgcaagctggaagatatgtttagtacaattccagattggaaaatttaaaaaagaatatgaacatagttttaccacca |
46214098 |
T |
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| Q |
229 |
tacaaggcagaagctnnnnnnnntgcttaaccgtacatcctattatttttatggacagaagataaaatatcagtgagactagaaagaatgaaaaaagcat |
328 |
Q |
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| T |
46214099 |
tacaaggcagaagctaaaaaaaatgcttaaccatacatcctattatttttatggacagaagataaaatatcagtgagactagaaagaatgaaaaaagctt |
46214198 |
T |
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| Q |
329 |
aaccatctattatatt |
344 |
Q |
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| T |
46214199 |
aaccatctattatatt |
46214214 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 12044444 - 12044495
Alignment:
| Q |
52 |
tttatacacatgagttcatatgaaaatgaagaagatgacaagaataactaac |
103 |
Q |
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| T |
12044444 |
tttatacatacgagttcatatgaaaatgaagaagataacagggataactaac |
12044495 |
T |
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