View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1398_low_15 (Length: 289)
Name: NF1398_low_15
Description: NF1398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1398_low_15 |
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| [»] scaffold0096 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 7 - 287
Target Start/End: Complemental strand, 10624830 - 10624550
Alignment:
| Q |
7 |
attattccttctcattggttgtgctggcttctctgcattttacattttacaagtaagttcacatatacatattagaaccacaaacttatactttaaacaa |
106 |
Q |
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| T |
10624830 |
attattccttctcattggttgtgctggcttctctgcattttacattttacaagtaagttcacatatacatattagaaccacaaacttatactttaaccaa |
10624731 |
T |
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| Q |
107 |
ataatgtctatagtcgttaaagtttcaaatgatttttaaatattggtttcgacccgactaaacaatttctaatcaattccaggctataacattgagaaag |
206 |
Q |
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| T |
10624730 |
ataatgtctatagtcgttaaagtttcaaatgatttttaaatattggtttcgacccgactaaacaatttctaatcaattgcaggctataacattgagaaag |
10624631 |
T |
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| Q |
207 |
tatccagcagagatgtcactagccacgtgggtttgctttattggtgcacttcaaagcagtgctgtaactattttcttggag |
287 |
Q |
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| T |
10624630 |
tatccagcagagatgtcactggccacgtgggtttgctttattggtgcacttcaaagcagtgctgtaactattttcatggag |
10624550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 95 - 280
Target Start/End: Original strand, 21095186 - 21095371
Alignment:
| Q |
95 |
tactttaaacaaataatgtctatagtcgttaaagtttcaaatgatttttaaatattggtttcgaccc-gactaaacaatttctaatcaattccaggctat |
193 |
Q |
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| T |
21095186 |
tacttttaacaaatgatgtctattgtcgttaaagtttcgaacaattttcaaatacag-tttcgaccctgaataaacaatctcatatcaattgcaggccac |
21095284 |
T |
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| Q |
194 |
aacattgagaaagtatccagcagagatgtcactagccacgtgggtttgctttattggtgcacttcaaagcagtgctgtaactatttt |
280 |
Q |
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| T |
21095285 |
atcattgagaaagtatccagcaaatatgtcattagccacatgggtttgctttgttggtgcacttcaaagctttgttgtaactatttt |
21095371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 89 - 278
Target Start/End: Complemental strand, 45560 - 45371
Alignment:
| Q |
89 |
aacttatactttaaacaaataatgtctatagtcgttaaagtttcaaatgatttttaaatattggtttcgaccc-gactaaacaatttctaatcaattcca |
187 |
Q |
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| T |
45560 |
aacttctacttttaacaaatgatgtctattgttgttaaagtttcgaacaattttcaaatacag-tttcgaccctgaataaacaatctcttatcaattgca |
45462 |
T |
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| Q |
188 |
ggctataacattgagaaagtatccagcagagatgtcactagccacgtgggtttgctttattggtgcacttcaaagcagtgctgtaactatt |
278 |
Q |
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| T |
45461 |
ggccacatcattgagaaagtatccagcaaatatgtcattagccacatgggtttgctttgttggtgcacttcaaagcactgttgtaactatt |
45371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 46020 - 45964
Alignment:
| Q |
20 |
attggttgtgctggcttctctgcattttacattttacaagtaagttcacatatacata |
77 |
Q |
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| T |
46020 |
attggttgtgttggaatctctgccttctacattttacaagtaag-tcacatatacata |
45964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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