View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1398_low_16 (Length: 288)
Name: NF1398_low_16
Description: NF1398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1398_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 40482515 - 40482374
Alignment:
| Q |
50 |
ttagtttgattcttataagtgtatccactggttagtttgatcgtttaatgcgtcttttatttgtcagtttagtctatcaaattactagtagataatatgc |
149 |
Q |
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| T |
40482515 |
ttagtttgattcttaaaagtgtatccactagttaatttgatcgtttaatgtgtcttttatttgtcagtttagtctatcaaattactagtagataatatgc |
40482416 |
T |
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| Q |
150 |
tcaagggtatttatgtaattttgatacattcaacaattatag |
191 |
Q |
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| T |
40482415 |
tcaagggtatttatgtaattttgatacattcaacaattatag |
40482374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 40513189 - 40513048
Alignment:
| Q |
50 |
ttagtttgattcttataagtgtatccactggttagtttgatcgtttaatgcgtcttttatttgtcagtttagtctatcaaattactagtagataatatgc |
149 |
Q |
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| T |
40513189 |
ttagtttgattcttaaaagtgtatccactagttaatttgatcgtttaatgtgtcttttatttgtcagtttagtctatcaaattactagtagataatatgc |
40513090 |
T |
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| Q |
150 |
tcaagggtatttatgtaattttgatacattcaacaattatag |
191 |
Q |
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| T |
40513089 |
tcaagggtatttatgtaattttgatacattcaacaattatag |
40513048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 239
Target Start/End: Complemental strand, 40482373 - 40482344
Alignment:
| Q |
210 |
ggttaggactcgaaccgaaatgtgtatatt |
239 |
Q |
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| T |
40482373 |
ggttaggactcgaaccgaaatgtgtatatt |
40482344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 239
Target Start/End: Complemental strand, 40513047 - 40513018
Alignment:
| Q |
210 |
ggttaggactcgaaccgaaatgtgtatatt |
239 |
Q |
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| T |
40513047 |
ggttaggactcgaaccgaaatgtgtatatt |
40513018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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