View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1398_low_2 (Length: 458)
Name: NF1398_low_2
Description: NF1398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1398_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 29 - 453
Target Start/End: Original strand, 54416310 - 54416735
Alignment:
| Q |
29 |
actatcaacagcttagttacacgtttgactgtgaagatgtgctcatacttgtcagaaaatggtatattacaagttttagcttgatgacaataaataattt |
128 |
Q |
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| T |
54416310 |
actatcaacagcttagttacacgtttgactgtgaagatgtgctcatacttgtcagaaaatggtatattacaagttttagcttgatgacaataaataattt |
54416409 |
T |
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| Q |
129 |
ttacttgcattgttagcctaatatgtaatataagaccttaaactagtgtagaagtgttgtgtttccgacgtttattctgaagcttaaccattaaatacta |
228 |
Q |
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| T |
54416410 |
ttacttgcattgttagcctaatatgtaatataagaccttaaactagtgtagaagtgttacgtttccgacgtttattctgaagcttaaccattaaatacta |
54416509 |
T |
|
| Q |
229 |
ttttcatttcttatctactctaattaatggtctttttgttcc-nnnnnnnnatctttacaaaatcgtatcttcgtaggatctcaagacagtggcaccaat |
327 |
Q |
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| T |
54416510 |
ttttcatttcttatctactctaattaatggtctttttgttcctttttttttatctttacaaaatcgtatcttcgtaggatctcaagacagtggcaccaat |
54416609 |
T |
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| Q |
328 |
gcacagttctgtattcagcatttggtccgtaaacttggaagtgcgccctatattggccaacgggttatactttccgtttgtcaaagaattttggtgttag |
427 |
Q |
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| T |
54416610 |
gcacagttctgtattcagcatttggtccgtaaacttggaagtgcgccctatattggccaacgggttatactttcagtttgtcaaagaattttggtgttag |
54416709 |
T |
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| Q |
428 |
cagaacgtttgcttttctctgctcct |
453 |
Q |
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| T |
54416710 |
cagaacgtttgcttttctctgatcct |
54416735 |
T |
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