View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1398_low_21 (Length: 265)
Name: NF1398_low_21
Description: NF1398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1398_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 22218957 - 22218864
Alignment:
| Q |
143 |
gaagagtttgtggttggatgttactaaataggttgaggaatctgataagggcgtgaagagcactagctatggtgcaaaatgcttctgcacttga |
236 |
Q |
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| T |
22218957 |
gaagagtttgtgattggatgttactaaataggttgaggaatctgataagggcgtgaagagcactagctatcgtgtgaaatgcttctgcacttga |
22218864 |
T |
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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 14689782 - 14689685
Alignment:
| Q |
104 |
aatttatcattctcaaggttcactcatatatcctaataagaagagtttgtggttggatgttactaaataggttgaggaatctgataagggcgtgaaga |
201 |
Q |
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| T |
14689782 |
aatttatcattgtcgaggttcatttacatatcctaataagaagagtttgtgattggtggttactaagtcggtcgaagaatctgaaaagggcatgaaga |
14689685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 14660407 - 14660446
Alignment:
| Q |
60 |
tggttatatcgcgtcttgtgtgtttagtgaattaatatat |
99 |
Q |
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| T |
14660407 |
tggttatatcgtgtcttgtgtgtttagtgaattaatatat |
14660446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 14678672 - 14678633
Alignment:
| Q |
60 |
tggttatatcgcgtcttgtgtgtttagtgaattaatatat |
99 |
Q |
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| T |
14678672 |
tggttatatcgtgtcttgtgtgtttagtgaattaatatat |
14678633 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 18365570 - 18365615
Alignment:
| Q |
139 |
ataagaagagtttgtggttggatgttactaaataggttgaggaatc |
184 |
Q |
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| T |
18365570 |
ataagaagagtttgtgattggttgttactaaacaggttgaagaatc |
18365615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 36597355 - 36597310
Alignment:
| Q |
139 |
ataagaagagtttgtggttggatgttactaaataggttgaggaatc |
184 |
Q |
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| T |
36597355 |
ataagaagagtttgtgattggttgttactaaacaggttgaagaatc |
36597310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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