View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1398_low_5 (Length: 406)
Name: NF1398_low_5
Description: NF1398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1398_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 48 - 331
Target Start/End: Original strand, 47188508 - 47188791
Alignment:
| Q |
48 |
atgaacaaaaagagtttgttgtgaagctgctaagctagggtttgtagtagttttcaatccaataacaagatcctttaataaaattgcatttcattcataa |
147 |
Q |
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| T |
47188508 |
atgaacaaaaagagtttgttgtgaagctgctaagctagggtttgtagtagttttcaatccaataacaagatcctttaataaaattgcatttcattcataa |
47188607 |
T |
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| Q |
148 |
aaattaattaattcaaaagataagagtgtcgacacacacaaatatgtatgcattaaacaacacatgaactttgagaatgcaggactctaatacaacttca |
247 |
Q |
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| T |
47188608 |
aaattaattaactcaaaagataagagtgtcgacacacacatatatgtatgcattaaacaacacatgaactttaagaatgcaggactctaatacaacttca |
47188707 |
T |
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| Q |
248 |
atggttacacacccttaatctgattatgatcgtgccatgttaagtgtgtttggattttgctccaaaagctaatccattagatga |
331 |
Q |
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| T |
47188708 |
atggttacacacccttaatctgattatgatcgtgccatgttaagtgtgtttggattttgctccaaaagctaatccattagatga |
47188791 |
T |
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